Citations in PubMed

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PDB ID Mentions in PubMed Central Article count: 2

Citations in PubMed

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PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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Heterologous expression of plasmodial proteins for structural studies and functional annotation.

(2008) Malar J 7

PubMed: 18828893 | PubMedCentral: PMC2567985 | DOI: 10.1186/1475-2875-7-197

PlasmoDB annotation Product Drug-ability Index (max is 1) MM (Da) pI Heterologous Expression (Ref) Tag Special conditions (e.g. codon adaptation, TM, trunctions) Structure (PDB code) PF14_0053 Ribonuc... eotide reductase small subunit 1 40600 5.2 E. coli [ 212 ] His and GST - - PFD0830w Bifunctional dihydrofolate reductase-thymidylate synthase 1 71738 7.2 - E. coli (various) - S. cerevisiae (complemeted) (various) - Cell free systems [ 207 ] - - Purposely truncated versions or domains - Codon optimised - S. cerevisiae adapted 1J3I 1J3J 1J3K PFE0520c Topoisomerase I 1 98110 9.8 - - - - PFF0160c Dihydroorotate dehydrogenase, mitochondrial precursor 1 65559 9.4 E. coli [ 213 ] His N-terminally truncated pRIL tRNA additions 1TV5 PFI1020c Inosine-5'-monophosphate dehydrogenase 1 56151 8.0 - - - - PF11_0377 Casein kinase 1 0.9 37631 9.7 E. coli [ 214 ] His 1lhx PF14_0192 Glutathione reductase 0.9 56679 8.1 E. coli complementation [ 215 ] His Gene complementation 1ONF PFI1685w cAMP-dependent protein kinase catalytic subunit 0.9 40197 9.1 - - - - PFI1170c Thioredoxin reductase 0.9 59687 7.8 E. coli [ 216 ] His - - MAL13P1.279 Protein kinase 5 0.9 32997 8.0 E. coli [ 217 ] His pRIL tRNA addition 1OB3 PFC0525c Glycogen synthase kinase 3 0.9 51616 5.2 E. coli [ 218 ] V5/His-/thioredoxin - - PFL2250c Rac-beta serine/threonine kinase 0.9 88096 10 E. coli [ 219 ] His or GST pRIL tRNA addition - PF10_0121 Hypoxanthine phosphoribosyltransferase 0.8 70076 4.6 E. coli [ 220 ] - - 1CJB PF10_0165 DNA polymerase delta catalytic subunit 0.8 127072 8.7 E. coli [ 221 ] 3-galactosidase - - PF10_0322 S-adenosylmethionine decarboxylase-ornithine decarboxylase 0.8 168171 6.3 E. coli [ 222 ] STREP - - PF13_0141 L-lactate dehydrogenase 0.8 34108 7.6 E. coli [ 223 , 224 ] - - 1 TM/1 signal peptide - 2xYT - reducing cell growth temperature to 15°C 1CEQ PF13_0287 Adenylosuccinate synthetase 0.8 50066 7.7 E. coli [ 225 ] - Low-temperature inductions were carried out at 20°C for 12 h 1P9B PFI1090w S-adenosylmethionine synthetase 0.8 44844 6.7 E. coli [ 226 ] His - PF14_0076 Plasmepsin 1 precursor 0.8 51461 7.2 1 TM 1PFZ PF14_0077 Plasmepsin 2 precursor 0.8 51481 5.3 E. coli [ 227 ] - 1 TM - Solubilised and refolded 1SME PF14_0125 Deoxyhypusine synthase 0.8 57429 6 P. vivax expressed 1 TM - PF14_0127 N-myristoyltransferase 0.8 47971 8.3 E. coli [ 228 ] His - -.

Publication Year: 2008


In silico and in vivo anti-malarial studies of 18? glycyrrhetinic acid from Glycyrrhiza glabra.

(2013) PLoS One 8

PubMed: 24086367 | PubMedCentral: PMC3782471 | DOI: 10.1371/journal.pone.0074761

For target protein preparation, structure of P. falciparum lactate dehydrogenase ( pf LDH) (PDB: 1CEQ) [ 21 ] was retrieved from a repository of experimentally elucidated crystal structure of biologic... l macromolecules available at the Brookhaven Protein Data Bank (PDB), USA (http://www.rcsb.org/pdb).

g004 Figure 4 Structural model Plasmodium falciparum lactate dehydrogenase ( pf L DH ) ( PDB: 1CEQ ) with NADH binding site (yellow color) (A).

t001 Table 1 Details of LibDock score, active site pocket residues and hydrogen bonds revealed through molecular docking of GA, CQ and NADH on Lactate dehydrogenase (PDB: 1CEQ) of P. falciparum .

Publication Year: 2013