Primary Citation PubMed: 10360578
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Single-molecule dynamics reveals cooperative binding-folding in protein recognition.
(2006) PLoS Comput Biol 2
PubMed: 16839193 | PubMedCentral: PMC1487182 | DOI: 10.1371/journal.pcbi.0020078
The single-molecule study of Cdc42 and the CBD fragment of WASP (PDB name: 1cee) shows significant static and dynamic conformational fluctuations for the binding from the bound and loosely bound state... , which suggests that biomolecular recognition involves a highly flexible protein tertiary structure, and the binding domains undergo dramatic conformational changes from disordered to ordered states upon complex formation [ 19 – 21 ].
The native structure of the Cdc42-CBD binding complex had already been experimentally determined (PDB: 1cee) [ 15 – 18 ].
Publication Year: 2006
Ensemble approach to predict specificity determinants: benchmarking and validation.
(2009) BMC Bioinformatics 10
PubMed: 19573245 | PubMedCentral: PMC2716344 | DOI: 10.1186/1471-2105-10-207
Potential subsites commonly identified by three methods, SPEER, GroupSim, and MultiRELIEF are mapped onto representative structures from the following families: a) ADP specific phosphofructokinase/glu... okinase family (1U2X); b) DUF498/DUF598 domain family (1IHN); c) guanine nucleotide exchange factor (GEF)-Ras like GTPases family (1NVX); d) p21-Rho binding domain family (1CEE); e) Raf-like Ras-binding domain family (1C1Y) and f) Ras association (RalGDS/AF-6) domain (1LFD) family.
Publication Year: 2009
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