Primary Citation PubMed: 9596584
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A structural basis for Staphylococcal complement subversion: X-ray structure of the complement-binding domain of Staphylococcus aureus protein Sbi in complex with ligand C3d.
(2011) Mol Immunol 48
PubMed: 21055811 | PubMedCentral: PMC3025320 | DOI: 10.1016/j.molimm.2010.09.017
While the structure of C3d in both complexes, when compared with a previous uncomplexed structure [PDB accession code 1C3D ( Nagar et al., 1998 )], revealed no significant structural changes in its cl... ssical α-α6 barrel fold (alignment within 3.5 Å, r.m.s.d. 0.7 Å), notable structural changes were observed between the previously described solution structure of Sbi-IV [PDB accession code 1JVH ( Upadhyay et al., 2008a )] and C3d-bound Sbi-IV.
Publication Year: 2011
Structural basis for engagement by complement factor H of C3b on a self surface.
(2011) Nat Struct Mol Biol 18
PubMed: 21317894 | PubMedCentral: PMC3512577 | DOI: 10.1038/nsmb.2018
C3d:FH19–20 Structure determination The structure of the C3d:FH19–20 complex was solved by molecular replacement using the program PHASER 56 , with the previously determined structure ... f FH (PDB accession code: 2G7I 43 ) and C3d (PDB accession code: 1C3D) 57 ) as search models.
The two sides of complement C3d: evolution of electrostatics in a link between innate and adaptive immunity.
(2012) PLoS Comput Biol 8
PubMed: 23300422 | PubMedCentral: PMC3531323 | DOI: 10.1371/journal.pcbi.1002840
(B) Electrostatic potential surface projection for C3d (PDB Code: 1C3D).
Methods All calculations for human C3d, as well as all homology modeling, was based on the crystal structure of unbound human C3d (PDB Code: 1C3D)  .
Publication Year: 2012
Zinc-induced self-association of complement C3b and Factor H: implications for inflammation and age-related macular degeneration.
(2013) J Biol Chem 288
PubMed: 23661701 | PubMedCentral: PMC3696691 | DOI: 10.1074/jbc.M113.476143
The predictions used crystal structures for C3 (PDB code 2A73 ) ( 4 ), C3b (PDB codes 2I07 and 2ICF ) ( 51 , 52 ), C3c (PDB code 2A74 ) ( 4 ), and C3d (PDB codes 1C3D and 1GHQ ( 53 , 54 ), and a solut... on structure for C3u (PDB code 3MMQ ) ( 43 ).
The PDB codes are 2A73 for C3 ( A ), 3MMQ for C3u ( B ), 2I07 for C3b ( C ), 2A74 for C3c and 1C3D for C3d ( D ).
Name PDB code Number of C3 domains Number of residues in the PDB file Unique zinc binding residues predicted METSITE >0.7 Number of unique zinc binding residues per 100 residues C3 2A73 13 1611 38 2.4 C3b 2ICF 12 1545 45 2.9 C3b 2I07 12 1531 27 1.8 C3u 3MMQ 13 1531 28 1.8 C3c 2A74 10 1109 17 1.5 C3d 1C3D 1 294 3 1.0 C3d 1GHQ 1 307 4 1.3 The front and back surfaces of the five C3 proteins showed that the partial zinc binding site predictions were broadly distributed ( Fig. 8 ).
Publication Year: 2013
A revised mechanism for the activation of complement C3 to C3b: a molecular explanation of a disease-associated polymorphism.
(2015) J Biol Chem 290
PubMed: 25488663 | PubMedCentral: PMC4303685 | DOI: 10.1074/jbc.M114.605691
Scattering and Sedimentation Modeling of C3, C3u, C3b, C3c, and C3d The scattering modeling of human C3, C3c, and C3d utilized their crystal structures (Protein Data Bank codes 2A73 , 2A74 , and 1C3D ... respectively).
Publication Year: 2015
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