Primary Citation PubMed: 10074947
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A comprehensive update of the sequence and structure classification of kinases.
(2005) BMC Struct Biol 5
PubMed: 15771780 | PubMedCentral: PMC1079889 | DOI: 10.1186/1472-6807-5-6
Multiple sequence alignment for representative sequences of polyphosphate kinase (gi|7465499, Group 11) and the phospholipase D family (PDB|1bys ) is shown.
PPK contains two PLD-like subdomains, presumably arranged in the same manner as other PLD superfamily members such as tyrosyl-DNA phosphodiesterase (PDB|1jy1 [ 23 ]) and the homodimer of bacterial endonuclease Nuc from Salmonella typhimurium (PDB|1bys [ 24 ]), which is the closest structural template identified by 3D-Jury [ 16 ].
Publication Year: 2005
Crystal structure of the R-protein of the multisubunit ATP-dependent restriction endonuclease NgoAVII.
(2014) Nucleic Acids Res 42
PubMed: 25429979 | PubMedCentral: PMC4267654 | DOI: 10.1093/nar/gku1237
A DALI search ( 35 ) against the Protein Data Bank (PDB) database of protein structures revealed significant structural similarities between the N-terminal domain of R.NgoAVII and several PLD ... ucleases: BfiI REase N-terminal domain (PDB ID: 2C1L, Z-score 12.6); phospholipase D (PDB ID: 1BYS, Z-score 12.3) and Nuc nuclease (PDB ID: 1BYR, Z-score 12.3).
Publication Year: 2014
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