Citations in PubMed

Primary Citation PubMed: 10469831 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 2

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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Quantitative comparison of catalytic mechanisms and overall reactions in convergently evolved enzymes: implications for classification of enzyme function.

(2010) PLoS Comput Biol 6

PubMed: 20300652 | PubMedCentral: PMC2837397 | DOI: 10.1371/journal.pcbi.1000700

An example of convergence to the same overall reaction ( Figure S2 ), together with convergence of mechanisms and identical mechanistic steps ( Figure S4 ) is offered by the carboxylic-ester hydrolase... (EC 3.1.1), represented in the dataset by phospholipase A2 (MACiE M0083, EC 3.1.1.4, PDB 1l8s) [60] , [61] , 1-alkyl-2-acetylglycerophosphocholine esterase (MACiE M0094, EC 3.1.1.47, PDB 1bwp) [62] , [63] , and triacylglycerol lipase (MACiE M0218, EC 3.1.1.3, PDB 1hpl) [64] – [67] .

Publication Year: 2010


A measure of the broad substrate specificity of enzymes based on 'duplicate' catalytic residues.

(2012) PLoS One 7

PubMed: 23166637 | PubMedCentral: PMC3500292 | DOI: 10.1371/journal.pone.0049313

A platelet-activating factor acetylhydrolase (PAF-AH) (PDBid:1BWP) was identified as a protein with the lowest BrassIndex in this set [39] .

Lowest BrassIndex: Platelet-activating Factor Acetylhydrolase (PDBid:1BWP) Platelet-activating factor (PAF) is a very potent messenger phospholipid, found in picomolar concentrations in fluids like cytosol, blood plasma and urine [35] .

t005 Table 5 Potential and spatial congruence of ‘duplicate’ scaffolds to the active site in a acetylhydrolase (PDBid:1BWP).

( d ) Platelet-activating acetylhydrolase (PDBid:1BWP): This protein has the lowest BrassIndex, which is due to the absence of ‘duplicate’ residues in the proximity of the core active site residues ( Table 5 ).

PDB L Description 1QAM 244 ERMC' METHYLTRANSFERASE 1OH9 258 ACETYLGLUTAMATE KINASE 1EH5 279 PALMITOYL THIOESTERASE 1 1QGX 357 3'-5'-ADENOSINE BISPHOSPHATASE Highest 1DUB 261 2-ENOYL-COA HYDRATASE 2JXR 329 PROTEINASE A 2HGS 474 GLUTATHIONE SYNTHETASE 1D8H 311 mRNA TRIPHOSPHATASE CET1 1D2H 292 GLYCINE N-METHYLTRANSFERASE 1HZD 272 AU-BINDING PROTEIN/ENOYL-COA HYDRATASE 1BWP 233 PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE 1AKO 268 EXONUCLEASE III 1L1L 739 RIBONUCLEOSIDE TRIPHOSPHATE REDUCTASE 2DLN 306 D-ALANINE–D-ALANINE LIGASE 1NWW 149 LIMONENE-12-EPOXIDE HYDROLASE Lowest 1EI5 520 D-AMINOPEPTIDASE 1NBA 264 N-CARBAMOYLSARCOSINE AMIDOHYDROLASE 1EC9 446 GLUCARATE DEHYDRATASE 3R1R 761 RIBONUCLEOTIDE REDUCTASE R1 1STD 172 SCYTALONE DEHYDRATASE 1.

Publication Year: 2012