Primary Citation PubMed: 10469831
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Quantitative comparison of catalytic mechanisms and overall reactions in convergently evolved enzymes: implications for classification of enzyme function.
(2010) PLoS Comput Biol 6
PubMed: 20300652 | PubMedCentral: PMC2837397 | DOI: 10.1371/journal.pcbi.1000700
An example of convergence to the same overall reaction ( Figure S2 ), together with convergence of mechanisms and identical mechanistic steps ( Figure S4 ) is offered by the carboxylic-ester hydrolase... (EC 3.1.1), represented in the dataset by phospholipase A2 (MACiE M0083, EC 22.214.171.124, PDB 1l8s)  ,  , 1-alkyl-2-acetylglycerophosphocholine esterase (MACiE M0094, EC 126.96.36.199, PDB 1bwp)  ,  , and triacylglycerol lipase (MACiE M0218, EC 188.8.131.52, PDB 1hpl)  –  .
Publication Year: 2010
A measure of the broad substrate specificity of enzymes based on 'duplicate' catalytic residues.
(2012) PLoS One 7
PubMed: 23166637 | PubMedCentral: PMC3500292 | DOI: 10.1371/journal.pone.0049313
A platelet-activating factor acetylhydrolase (PAF-AH) (PDBid:1BWP) was identified as a protein with the lowest BrassIndex in this set  .
Lowest BrassIndex: Platelet-activating Factor Acetylhydrolase (PDBid:1BWP) Platelet-activating factor (PAF) is a very potent messenger phospholipid, found in picomolar concentrations in fluids like cytosol, blood plasma and urine  .
t005 Table 5 Potential and spatial congruence of ‘duplicate’ scaffolds to the active site in a acetylhydrolase (PDBid:1BWP).
( d ) Platelet-activating acetylhydrolase (PDBid:1BWP): This protein has the lowest BrassIndex, which is due to the absence of ‘duplicate’ residues in the proximity of the core active site residues ( Table 5 ).
PDB L Description 1QAM 244 ERMC' METHYLTRANSFERASE 1OH9 258 ACETYLGLUTAMATE KINASE 1EH5 279 PALMITOYL THIOESTERASE 1 1QGX 357 3'-5'-ADENOSINE BISPHOSPHATASE Highest 1DUB 261 2-ENOYL-COA HYDRATASE 2JXR 329 PROTEINASE A 2HGS 474 GLUTATHIONE SYNTHETASE 1D8H 311 mRNA TRIPHOSPHATASE CET1 1D2H 292 GLYCINE N-METHYLTRANSFERASE 1HZD 272 AU-BINDING PROTEIN/ENOYL-COA HYDRATASE 1BWP 233 PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE 1AKO 268 EXONUCLEASE III 1L1L 739 RIBONUCLEOSIDE TRIPHOSPHATE REDUCTASE 2DLN 306 D-ALANINE–D-ALANINE LIGASE 1NWW 149 LIMONENE-12-EPOXIDE HYDROLASE Lowest 1EI5 520 D-AMINOPEPTIDASE 1NBA 264 N-CARBAMOYLSARCOSINE AMIDOHYDROLASE 1EC9 446 GLUCARATE DEHYDRATASE 3R1R 761 RIBONUCLEOTIDE REDUCTASE R1 1STD 172 SCYTALONE DEHYDRATASE 1.
Publication Year: 2012
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