Primary Citation PubMed: 7599119
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Rosetta in CAPRI rounds 13-19.
(2010) Proteins 78
PubMed: 20597089 | PubMedCentral: PMC2952713 | DOI: 10.1002/prot.22784
Target 40: API-A and Trypsin The bound structure of the double-headed arrowhead protease inhibitor-A (API-A) was provided by the contributors, together with an unbound structure of bovine trypsin (PDB... entry 1BTY 21 ).
Publication Year: 2010
SwarmDock and the use of normal modes in protein-protein docking.
(2010) Int J Mol Sci 11
PubMed: 21152290 | PubMedCentral: PMC2996808 | DOI: 10.3390/ijms11103623
For target 40, both trypsin binding sites of the double-headed arrowhead inhibitor complex (pdb 3E8L) were predicted, one with medium accuracy and the other with high accuracy, by docking unbound bovi... e trypsin (pdb 1BTY [ 70 ]) to the bound form of the inhibitor.
Rapid and accurate prediction and scoring of water molecules in protein binding sites.
(2012) PLoS One 7
PubMed: 22396746 | PubMedCentral: PMC3291545 | DOI: 10.1371/journal.pone.0032036
Protein PDB code Resolution (Å) Ligand BRD4 2OSS 1.35 None BRD4 3MXF 1.6 JQ1 Trypsin 1SOQ 1.02 None Trypsin 1BTY 1.5 Benzamidine HSP 90 a 1AH6 1.8 None HSP 90 1AM1 2 ADP Penicillopepsin a 3APP... 1.8 None Penicillopepsin 1BXQ 1.41 PPi3 Cytochrome P450 2B4 1PO5 1.6 None Cytochrome P450 2B4 1SUO 1.9 4-(4-chlorophenyl) imidazole PIM1 kinase a 1YWV 2 None PIM1 kinase 1XWS 1.8 BI1 Purine nucleoside phosphorylase 1V48 2.2 DFPP-G GluA2 ligand binding core 1FTM 1.7 AMPA HIV-1 protease 1KZK 1.09 JE-2147 a Structures that were selected for molecular dynamics simulations.
Publication Year: 2012
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