Citations in PubMed

Primary Citation PubMed: 9753330 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 3

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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Cross-over between discrete and continuous protein structure space: insights into automatic classification and networks of protein structures.

(2009) PLoS Comput Biol 5

PubMed: 19325884 | PubMedCentral: PMC2654728 | DOI: 10.1371/journal.pcbi.1000331

However CATH classifies domain 1lvfa_, which is STAT-like according to SCOP, in the Spectrin repeat-like fold, while a paper of the SCOP team reports that the SCOP release 1.53 changed the classificat... on of domain 1br0 from spectrin repeat to STAT-like, showing that even experts can confound these two folds [46] .

Publication Year: 2009


Structure prediction for the helical skeletons detected from the low resolution protein density map.

(2010) BMC Bioinformatics 11 Suppl 1

PubMed: 20122218 | PubMedCentral: PMC3009517 | DOI: 10.1186/1471-2105-11-S1-S44

Table 1 The test of the structure prediction for the helical skeletons No ID #AA a #hlces b #sticks c #Possible Topologies d #Valid Topologies e #Generated structures f Rank g RMSD h Prct i 1 1DP3 55 ... 3 48 6 3000 10 4.78 0.33% 2 1A2T 149 3 3 48 32 16000 15 3.72 0.09% 3 1AIL 73 3 3 48 16 8000 3 3.96 0.04% 4 1BUU 168 3 3 48 16 8000 27 4.67 0.34% 5 1lRE 81 3 3 48 18 9000 10 4.55 0.11% 6 1BR0 120 3 3 48 4 2000 4 11.17 0.20% 7 1B67 68 3 3 48 14 7000 17 4.03 0.24% 8 1AYI 87 4 3 192 48 24000 93 3.8 0.39% 9 1BEA 127 4 3 192 160 80000 572 4.75 0.72% 10 1GXG 85 4 3 192 40 20000 12 2.8 0.06% 11 1NO1 126 4 3 192 120 60000 42 4.24 0.07% 12 2EZH 75 4 3 192 104 52000 47 4.2 0.09% 13 1A3C 181 4 3 192 48 24000 110 3.57 0.46% 14 1A32 88 4 3 192 40 20000 9 3.69 0.05% 15 1PZ4 116 4 3 192 72 36000 147 7.3 0.41% 16 1LIH 164 4 3 192 124 62000 114 5.48 0.18% 17 1DXS 80 5 3 480 450 225000 30 3.51 0.01% 18 1SU0 159 5 3 480 96 48000 60 6.69 0.13% 19 1BO9 73 6 3 960 438 219000 35 3.43 0.02% 20 1JW2 72 4 4 384 66 33000 31 4.26 0.09% 21 1I2T 61 4 4 384 64 32000 21 5.58 0.07% 22 1CCD 77 4 4 384 20 10000 3 4.75 0.03% 23 2PSR 100 5 4 1920 468 234000 339 4.75 0.14% 24 1A7D 118 6 4 5760 139 69500 144 5.33 0.21% 25 2LIS 136 6 4 5760 144 72000 8 4.84 0.01% 26 1ALU 186 6 4 5760 419 209500 288 7.22 0.14% 27 1HXI 121 6 4 5760 400 200000 17 3.78 0.01% 28 1JMW 146 6 4 5760 304 152000 129 5.25 0.08% 29 1AA2 108 7 4 13440 768 384000 3599 4.15 0.94% 30 1BVC 153 8 4 26880 1215 607500 8 5.59 0.00% 31 1BZ4 144 5 5 3840 16 8000 31 4.91 0.39% 32 1AEP 161 5 5 3840 157 78500 204 5.3 0.26% 33 1DUS 194 6 5 23040 3840 1920000 2179 4.44 0.11% 34 1B5L 172 6 5 23040 438 219000 759 5.44 0.35% 35 1FLP 142 7 6 322560 7734 3867000 4707 4.65 0.12% a: the number of amino acids in the protein b: the number of helices in the protein c: the number of skeletons detected by Helix Tracer d: the number of all possible topologies e: the number of valid topologies after applying distance and length screening f: the number of structures generated for all valid topologies g: the highest rank of the structure that has the correct topology h: the Root Mean Square Deviation (RMSD) of Cá atoms of the structure that has the highest rank with the correct topology i: the percentage of the highest rank among all generated structures Figure 2 The highest ranked structure with the correct topology for 1B5L (PDB ID) .

Publication Year: 2010


Crystal structure of the Habc domain of neuronal syntaxin from the squid Loligo pealei reveals conformational plasticity at its C-terminus.

(2004) BMC Struct Biol 4

PubMed: 15113421 | PubMedCentral: PMC415556 | DOI: 10.1186/1472-6807-4-6

The secondary structure of the three-helical bundle domain of rat neuronal syntaxin was initially determined by NMR (pdb code 1BR0 [ 17 ]) and confirmed by X-ray crystallography (pdb code 1EZ3 [ 18 ])...

Publication Year: 2004