Citations in PubMed

Primary Citation PubMed: 10388840 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 10

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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The contrasting properties of conservation and correlated phylogeny in protein functional residue prediction.

(2008) BMC Bioinformatics 9

PubMed: 18221517 | PubMedCentral: PMC2267696 | DOI: 10.1186/1471-2105-9-51

Illustration of the dimer structure for Pfam family PF00155 (amino transferase class I and II) in the Trypanosoma Cruzi structure (PDB code 1BM0 , [38]).

Publication Year: 2008


Five tyrosines and two serines in human albumin are labeled by the organophosphorus agent FP-biotin.

(2008) Chem Res Toxicol 21

PubMed: 18707141 | PubMedCentral: PMC2646670 | DOI: 10.1021/tx800144z

The picture was made with PyMol software using the structure in PDB code 1bm0 ( 28 ).

Publication Year: 2008


Structure-based mutagenesis reveals the albumin-binding site of the neonatal Fc receptor.

(2012) Nat Commun 3

PubMed: 22215085 | PubMedCentral: PMC3272563 | DOI: 10.1038/ncomms1607

The coordinates for HSA DIII (a.a. 382–582) were retrieved from the crystal structure of HSA at 2.5 Å (PDB code 1bm0) 20 .

Publication Year: 2012


Evidence for water-tuned structural differences in proteins: an approach emphasizing variations in local hydrophilicity.

(2012) PLoS One 7

PubMed: 23049837 | PubMedCentral: PMC3458090 | DOI: 10.1371/journal.pone.0045681

HSA without FAs (pdb-ID: 1BM0, blue) aligned with the crystal structure of BSA without FAs (pdb-ID: 3v03, red) using the MUSTANG algorithm.

As can be seen from comparing the HSA and BSA structures (pdb-IDs 1BM0 and 3v03, respectively), 75.52% sequence homology can on the other hand produce almost identical 3-D crystal structures (see Fig. 4 ), which confirms that the 3-D structural homology threshold for proteins longer than 80 residues produces similar structures for already 25% sequence compliance [51] .

To quantitatively compare structural identities in the crystal state, both proteins in their ligand-free form (pdb-IDs 3v03 [35] and 1BM0 [36] ) were aligned with the MUSTANG algorithm [37] which delivers an RMSD of 1,361 Å and a sequence identity of 75,52% over 572 aligned residues.

Publication Year: 2012


Protein molecular surface mapped at different geometrical resolutions.

(2013) PLoS One 8

PubMed: 23516572 | PubMedCentral: PMC3597524 | DOI: 10.1371/journal.pone.0058896

Protein name PDB code Atoms Residues Chains 1 1 α lactalbumin 1A4V 1092 123 1 2 2 porcine β-lactoglobulin 1EXS 1248 160 1 3 bovine β-lactoglobulin 1BEB 2473 324 2 3, Subset 3.1... RMSD(129) = 0.6481 4 hen egg-white lysozyme 1LYZ 1001 129 1 5 turkey egg-white lysozyme 135L 994 129 1 6 hen egg-white lysozyme 2LYM 1001 129 1 7 triciclic lysozyme 2LZT 1001 129 1 3, Subset 3.2 RMSD(164) = 0.24 8 mutant of phage T4 lysozyme 1L35 1305 164 1 9 T4 lysozyme 1LYD 1309 164 1 4 RMSD(124) = 0.1655 10 ribonuclease-A 8RAT 951 124 1 11 ribonuclease-A 1RBX 956 124 1 12 bovine ribonuclease-A 3RN3 957 124 1 13 ribonuclease-A 1AFU 1894 248 2 5, Subset 5.1 RMSD(287)  = 0.8877 14 human oxyhemoglobin 1HHO 2192 287 2 15 human carbonmonoxy hemoglobin 2HCO 2192 287 2 16 horse deoxyhemoglobin 2DHB 2201 287 2 5, Subset 5.2 RMSD(574)  = 1.501 17 human hemoglobin A 1BUW 4342 574 4 18 human hemoglobin (W37A) 1Y4F 4368 574 4 19 hemoglobin mutant (W37A) 1A01 4368 574 4 20 human hemoglobin (W37E) 1Y4P 4376 574 4 21 hemoglobin mutant (W37Y) 1A00 4382 574 4 22 human hemoglobin (W37Y) 1Y46 4382 574 4 23 human deoxyhemoglobin 2HHB 4384 574 4 24 human hemoglobin (W37G) 1Y4G 4366 574 4 25 hemoglobin mutant (V1M) 1A0U 4386 574 4 26 hemoglobin mutant (V1M) 1A0Z 4386 574 4 27 recombinant hemoglobin 1C7D 4396 576 3 6 RMSD(585) = 2.3740 28 human serum albumin complexed with octadecanoic acid 1E7I 4496 585 1 29 recombinant human serum albumin 1UOR 4617 585 1 30 human serum albumin 1E78 4302 585 1 31 human serum albumin 1AO6 4600 585 1 32 human serum albumin 1BM0 4600 585 1 7 33 immunoglobulin 1IGY 10002 1294 4 34 immunoglobulin 1IGT 10196 1316 4 35 intact human IgG B12 1HZH 10355 1344 4 To quantify the similarity between the members of a class, for all sets, or subsets, i.e., for lysozyme and hemoglobins, the Root-Mean-Square Deviation (RMSD) has been calculated using the protein structure comparison service Fold at the European Bioinformatics Institute ( http://www.ebi.ac.uk/msd-srv/ssm ).

Publication Year: 2013


Probing the interaction of a therapeutic flavonoid, pinostrobin with human serum albumin: multiple spectroscopic and molecular modeling investigations.

(2013) PLoS One 8

PubMed: 24116089 | PubMedCentral: PMC3792979 | DOI: 10.1371/journal.pone.0076067

Three crystal structures of HSA (PDB IDs: 1BM0, 2.5 Å resolution; 2BXD, 3.05 Å and 2BXF, 2.95 Å) were downloaded from the Protein Data Bank for the docking analysis [26] .

The different crystal structures of HSA used in the analysis were (A) 1BM0, (B) 2BXD and (C) 2BXF.

The docking simulation of 1BM0–PS was analyzed due to the fact that 1BM0 is the highest resolution HSA crystal structure available [42] .

Publication Year: 2013


Studies of the interaction between isoimperatorin and human serum albumin by multispectroscopic method: identification of possible binding site of the compound using esterase activity of the protein.

(2013) ScientificWorldJournal 2013

PubMed: 24319355 | PubMedCentral: PMC3844181 | DOI: 10.1155/2013/305081

Of more than 50 X-ray crystallographic structures related to human serum albumin, in Protein Data Bank [ 32 ], entry with PDB ID:1BM0 [ 33 ] was chosen for dockings because of no missing atoms, no coc... ystallized ligand, and having a reasonably good resolution (2.5 Å).

The crystal structure of protein was obtained from Protein Data Bank (1BM0).

Publication Year: 2013


Predicting the activity coefficients of free-solvent for concentrated globular protein solutions using independently determined physical parameters.

(2013) PLoS One 8

PubMed: 24324733 | PubMedCentral: PMC3852980 | DOI: 10.1371/journal.pone.0081933

For BSA, three molecular structures are available (two in the Protein Data Bank (PDB: 3V03 [20] and 4F5S [21] ) and a homology model (based on human serum albumin (PDB: 1BM0 [22] ) [23] ).

Publication Year: 2013


Mapping hydrophobicity on the protein molecular surface at atom-level resolution.

(2014) PLoS One 9

PubMed: 25462574 | PubMedCentral: PMC4252106 | DOI: 10.1371/journal.pone.0114042

Protein name PDB code Atoms Residues Chains 1 1 α lactalbumin 1A4V 1092 123 1 2 2 porcine β-lactoglobulin 1EXS 1248 160 1 3 bovine β-lactoglobulin 1BEB 2473 324 2 3 4 chicken e... g-white lysozyme 1LYZ 1001 129 1 5 turkey egg-white lysozyme 135L 994 129 1 6 hen egg-white lysozyme 2LYM 1001 129 1 7 triciclic lysozyme 2LZT 1001 129 1 8 mutant phage T4 lysozyme 1L35 1305 164 1 9 T4 lysozyme 1LYD 1309 164 1 4 10 ribonuclease-A 8RAT 951 124 1 11 ribonuclease-A 1RBX 956 124 1 12 bovine ribonuclease-A 3RN3 957 124 1 13 ribonuclease-A 1AFU 1894 248 2 5 14 human oxyhemoglobin 1HHO 2192 287 2 15 human carbonmonoxy hemoglobin 2HCO 2192 287 2 16 horse hemoglobin 2DHB 2201 287 2 17 human hemoglobin A 1BUW 4342 574 4 18 human hemoglobin 1Y4F 4368 574 4 19 hemoglobin mutant 1A01 4368 574 4 20 human hemoglobin 1Y4P 4376 574 4 21 hemoglobin mutant 1A00 4382 574 4 22 human hemoglobin 1Y46 4382 574 4 23 human deoxyhemoglobin 2HHB 4384 574 4 24 human hemoglobin 1Y4G 4366 574 4 25 hemoglobin mutant 1A0U 4386 574 4 26 hemoglobin mutant 1A0Z 4386 574 4 27 recombinant hemoglobin 1C7D 4396 576 3 6 28 human serum albumin complex with octadecanoic acid 1E7I 4496 585 1 29 recombinant human serum albumin 1UOR 4617 585 1 30 serum albumin 1E_78 4302 585 1 31 human serum albumin 1AO6 4600 585 1 32 human serum albumin 1BM0 4600 585 1 7 33 immunoglobulin 1IGY 10002 1294 4 34 immunoglobulin 1IGT 10196 1316 4 35 intact human IgG B12 1HZH 10355 1344 4 Note: The proteins marked in bold are model proteins and those in italics have been also used for the analysis of statistical strength.

Publication Year: 2014


PubMed ID is not available.

Published in 2015

PubMedCentral: PMC4394470

The crystal structure of HSA (PDB code 1BM0, res.

For the 1BM0-curcumenone complex docking conformation, 4 hydrogen bonds were predicted involving hydrogen atoms from three different amino acid residues of HSA (Tyr-150, Arg-222 and Arg-257) and the oxygen atoms of the acetyl and ketone groups of curcumenone.

Publication Year: 2015