Primary Citation PubMed: 10331873
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Crystal structure of an active form of human MMP-1.
(2006) J Mol Biol 362
PubMed: 16890240 | PubMedCentral: PMC1885970 | DOI: 10.1016/j.jmb.2006.06.079
The peptide was modelled on the known structure of one of the chains of the triple-helical collagen (PDB code: 1BKV).
Publication Year: 2006
Cutoff Scanning Matrix (CSM): structural classification and function prediction by protein inter-residue distance patterns.
(2011) BMC Genomics 12 Suppl 4
PubMed: 22369665 | PubMedCentral: PMC3287581 | DOI: 10.1186/1471-2164-12-S4-S12
Three proteins with very different shapes were selected (a globin, PDB:1A6M; a porin, PDB:2ZFG; and a collagen, PDB:1BKV), and the topology of the contact graph obtained with different cutoffs is show... (6.0 Å, 9.0 Å and 12.0 Å).
Publication Year: 2011
Polarized Raman anisotropic response of collagen in tendon: towards 3D orientation mapping of collagen in tissues.
(2013) PLoS One 8
PubMed: 23691057 | PubMedCentral: PMC3655185 | DOI: 10.1371/journal.pone.0063518
Four different crystal structures of a collagen-like peptide and one alpha helix were selected in the Protein Data Bank (PDB, ) with the following identification numbers: for collagen-like peptides (1... AG  , 1BKV  , 1CGD  , 1QSU  ) and for an alpha-helix section of the protein: (1 XQ8  ).
To account for this the amide I response was averaged over 8 angles ω for “in plane” and “out of plane” positions of the collagen like-peptide structure ID:1BKV ( Fig. 4 ).
3) for four different collagen-like peptide structures (ID: 1CAG, 1BKV, 1CGD, 1QSU) that are rotated in the plane XZ (from (φ = 90°, θ = 90°) to (φ = 0°,θ = 90°)).
Publication Year: 2013
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