Primary Citation PubMed: 9836602
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Implementation of the Hungarian algorithm to account for ligand symmetry and similarity in structure-based design.
(2014) J Chem Inf Model 54
PubMed: 24410429 | PubMedCentral: PMC3958141 | DOI: 10.1021/ci400534h
(Right) β-Trypsin simulated in complex with 1-(4-amidinophenyl)-3-(4-chlorophenyl)urea, PDB 1BJU.
Figure 11 plots results derived from two protein–ligand trajectories from MD simulations performed previously in our laboratory: 47 (1) T4 lysozyme in complex with benzene (PDB 181L), 48 and (2) β-trypsin in complex with 1-(4-amidinophenyl)-3-(4-chlorophenyl)urea (PDB 1BJU).
Publication Year: 2014
PharmDock: a pharmacophore-based docking program.
(2014) J Cheminform 6
PubMed: 24739488 | PubMedCentral: PMC4012150 | DOI: 10.1186/1758-2946-6-14
The aspartate residue 189 of the specificity pocket in the trypsin active site forms strong hydrogen bonds with the amidinophenyl moiety of trypsin inhibitors (PDBID: 1BJU).
PubMed ID is not available.
Published in 2014
The DUD proteins include acetycholinesterase AChE (PDB code: 1EVE), human androgen receptor AR (PDB code: 1XQ2), human cyclin-dependent kinase 2 CDK2 (PDB code: 1CKP), human epidermal growth factor re... eptor EGFR (PDB code: 1M17), human mitogen-activated protein kinase 14 known as p38 (PDB code: 1KV2), human proto-oncogene tyrosine-protein kinase Src (PDB code: 2SRC), and cationic trypsin (PDB code: 1BJU).
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