Citations in PubMed

Primary Citation PubMed: 1512262 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 4

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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Spontaneous quaternary and tertiary T-R transitions of human hemoglobin in molecular dynamics simulation.

(2010) PLoS Comput Biol 6

PubMed: 20463873 | PubMedCentral: PMC2865513 | DOI: 10.1371/journal.pcbi.1000774

Materials and Methods Simulation setup The initial structures for the simulations starting from the R , R2 , and T state were taken from the protein data bank (PDB codes 1IRD [26] , 1B... B [7] and 2HHB [27] , respectively) and protonated using the pdb2gmx software.

Publication Year: 2010


Structure of the altitude adapted hemoglobin of guinea pig in the R2-state.

(2010) PLoS One 5

PubMed: 20811494 | PubMedCentral: PMC2927554 | DOI: 10.1371/journal.pone.0012389

Guinea pig hemoglobin (β1 = red, β2 = light red) and human hemoglobin (β1 = blue, β2 &#x... 003d; light blue) in the R2-state (PDB-code: 1BBB) were superimposed according to their C α -atoms.

The α1- and β2-subunit of guinea pig hemoglobin (α1 = light red) and human hemoglobin (α1 = light blue) in the R2-state (PDB-code: 1BBB, [10] ) were superimposed according to their C α -atoms.

Furthermore the position of His97 in human hemoglobin is shown in the T-state (grey, PDB-code: 1A3N, [36] ), R-state (orange, PDB-code: 1HHO, [37] ) and R2-state (light blue, PDB-code: 1BBB, [10] ).

The guinea pig hemoglobin structure is shown in cartoon representation, which is colored according to the distance between corresponding C α -atoms in guinea pig hemoglobin and the respective conformational state of human hemoglobin in (A) T-state (PDB-code: 1A3N, [36] ), (B) R-state (PDB-code: 1HHO, [37] ) and (C) R2-state (PDB-code: 1BBB, [10] ).

Publication Year: 2010


MARTINI bead form factors for the analysis of time-resolved X-ray scattering of proteins.

(2014) J Appl Crystallogr 47

PubMed: 25242909 | PubMedCentral: PMC4119947 | DOI: 10.1107/S1600576714009959

Figure 4 Calculated solution difference scattering between human deoxy and carbonmonoxy hemoglobin crystal models ( 2hhb – 1bbb ), compared with experimental solution data from Cammarata et al... (2008 ▶ ).

The following structures were used (PDB codes in brackets): sperm whale deoxy myoglobin ( 2g0v , second state; Aranda et al. , 2006 ▶ ), sperm whale carbonmonoxy myoglobin ( 2g0r ; Aranda et al. , 2006 ▶ ), human deoxy hemoglobin ( 2hhb ) and human carbonmonoxy hemoglobin ( 1bbb ); these structures were used without cofactors.

In order to estimate the accuracy of difference scattering calculations from coarse-grained structures, the predicted difference scattering between the crystal structures of human deoxy hemoglobin (PDB code 2hhb ; Fermi et al. , 1984 ▶ ) compared with human carbonmonoxy hemoglobin (PDB code 1bbb ; Silva et al. , 1992 ▶ ), as calculated with all-atom and coarse-grained methods, are shown in Fig. 4 ▶ .

Publication Year: 2014


PubMed ID is not available.

Published in 2015

PubMedCentral: PMC4420540

The B l ( q ) coefficients were evaluated to a maximum momentum transfer, q max , of 0.3 Å −1 (∼20 Å) for STMV (PDB code 1a34 ) and 0.6 Å... −1 (∼10 Å) for haemoglobin (PDB codes 1bbb and 2hbb ).

Figure 6 ( a ) FXS data calculated from the two haemoglobin crystal intermediates 1bbb (CO-haemoglobin; green and red cartoon and dotted lines) and 2hbb (deoxy-haemoglobin; blue cartoon and solid lines) in the Protein Data Bank.

Publication Year: 2015