Primary Citation PubMed: 10085115
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Conformational changes in protein loops and helices induced by post-translational phosphorylation.
(2006) PLoS Comput Biol 2
PubMed: 16628247 | PubMedCentral: PMC1440919 | DOI: 10.1371/journal.pcbi.0020032
Accession Numbers The Protein Data Bank ( http://www.rcsb.org/pdb ) accession numbers for the proteins discussed in this paper are as follows: β PGM, (PDB ID: 1LVH); CDK2, phosphorylated (PDB ... D: 1JST); CDK2, unphosphorylated (PDB ID: 1FIN); CDK2/KAP complex (PDB ID: 1FQ1); cyclin A (PDB ID: 1B39); ERK2, phosphorylated (PDB ID: 2ERK); ERK2, unphosphorylated (PDB ID: 1ERK); FixJ, phosphorylated (PDB ID: 1D5W); FixJ, unphosphorylated (PDB ID: 1DCK); GLM, (PDB ID: 1MKI); Hpr, phosphorylated (PDB ID: 1FU0); Hpr, unphosphorylated (PDB ID: 1PTF); LCK, (PDB ID: 3LCK); Pim1, (PDB ID: 2BIK); PMM, (PDB ID: 1K35); Psp, phosphorylated (PDB ID: 1J97); Psp, unphosphorylated (PDB ID: 1L7O); P38 γ, (PDB ID: 1CM8); SpoIIAA, phosphorylated (PDB ID: 1H4X); and SpoIIAA, unphosphorylated (PDB ID: 1H4Z); Spo0A, (PDB ID: 1QMP).
Publication Year: 2006
Insights into the conformational variability and regulation of human Nek2 kinase.
(2009) J Mol Biol 386
PubMed: 19124027 | PubMedCentral: PMC2741569 | DOI: 10.1016/j.jmb.2008.12.033
(a) Superposition of nucleotide-binding clefts of two inactive kinase conformations [Nek2-T175A ATPγS (yellow) and ATP-bound Cdk2 (cyan, Protein Data Bank code 1B39 )] and two active kinase co... formations [ADP-bound Aurora-A (magenta, Protein Data Bank code 1OL5 ) and ATP-bound Cdk2 (blue, Protein Data Bank code 1QMZ )].
Publication Year: 2009
Cofactor-mediated conformational control in the bifunctional kinase/RNase Ire1.
(2011) BMC Biol 9
PubMed: 21729334 | PubMedCentral: PMC3158555 | DOI: 10.1186/1741-7007-9-48
Coordinates are from PDB ID: 1hcl (apo-CDK2), 1b39 (ATP-bound CDK2), 1qmz (ATP-bound CDK2 with cyclin) and 1gy3 (ADP-bound CDK2 with cyclin).
Publication Year: 2011
The tumor suppressor CDKN3 controls mitosis.
(2013) J Cell Biol 201
PubMed: 23775190 | PubMedCentral: PMC3691455 | DOI: 10.1083/jcb.201205125
1B39 ) and CDC2 (PDB accession no.
Publication Year: 2013
A structure-guided approach for protein pocket modeling and affinity prediction.
(2013) J Comput Aided Mol Des 27
PubMed: 24214361 | PubMedCentral: PMC3851759 | DOI: 10.1007/s10822-013-9688-9
PDB codes of the pool of protein structures considered for model guidance in the CDK2 study: 1AQ1, 1FVT, 1FVV, 1GIH, 1B38, 1B39, 1FIN, 1FQ1, 1GY3, 1HCK, 1JST, 1QMZ, 1H08, 1DI8, 1H01, 1H00, 1E9H, 1JVP,... 1KE5, 1KE6, 1KE7, 1KE8, 1KE9, 1H07, 1E1X, 1JSV 26.
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