Primary Citation PubMed: 9003757
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ProCMD: a database and 3D web resource for protein C mutants.
(2007) BMC Bioinformatics 8 Suppl 1
PubMed: 17430555 | PubMedCentral: PMC1885840 | DOI: 10.1186/1471-2105-8-S1-S11
Variants with substitutions in the structurally solved regions of the protein C, have been modelled starting from X-ray coordinates (PDB entry 1AUT).
The script replaces the side chain of the mutated residue in the PDB file (1AUT) and optimizes the conformation by energy minimization and molecular dynamics.
Entry description All entries in the database are labeled by an unique identifier and may include the following fields: - sequence position of the mutated residues numbered according to:UniProtKB/Swiss-Prot entry P04070, Foster's codon numbering [ 25 ] and the chymotrypsin numbering used in PDB entry 1AUT when the substituted residue is included in the X-ray structure of protein C; - wild type and mutated residues; - gene localization; - clinical or laboratory phenotype data as obtained from other database reports or from the literature; - links to PUBMED database; - cross-references to other databases reporting the mutation.
Publication Year: 2007
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