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Combining structure and sequence information allows automated prediction of substrate specificities within enzyme families.
(2010) PLoS Comput Biol 6
PubMed: 20072606 | PubMedCentral: PMC2796266 | DOI: 10.1371/journal.pcbi.1000636
Trypsin family The ASC model for the trypsin family was built using a crystal structure of a serine protease (PDB-Id: 1AQ7,  ) and a distance cutoff of 5 Å.
Publication Year: 2010
VASP: a volumetric analysis of surface properties yields insights into protein-ligand binding specificity.
PubMed: 20814581 | PubMedCentral: PMC2930297 | DOI: 10.1371/journal.pcbi.1000881
Each line plots the average volume of intersection (vertical axis) of individual residues of trypsins in our dataset (pdb: 1a0j, 1aks, 1ane, 1aq7, 1bzx, 1fn8, 1h4w, 1trn, 2eek, 2f91, horizontal axis) ... ith the S1 subsite of chymotrypsin (pdb: 8gch).
A plot of the average volume of intersection (Vertical axis) of individual trypsin amino acids (pdb: 1a0j, 1aks, 1ane, 1aq7, 1bzx, 1fn8, 1h4w, 1trn, 2eek, 2f91, horizontal axis) and the S1 subsite of chymotrypsin (pdb: 8gch), computed at five different resolutions (colored lines).
S46 peptidases are the first exopeptidases to be members of clan PA.
(2014) Sci Rep 4
PubMed: 24827749 | PubMedCentral: PMC4021333 | DOI: 10.1038/srep04977
(C) Trypsin complexed with an inhibitor, AERUGINOSIN 98-B (PDB ID: 1AQ7).
Publication Year: 2014
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