Citations in PubMed

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PDB ID Mentions in PubMed Central Article count: 3

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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Combining structure and sequence information allows automated prediction of substrate specificities within enzyme families.

(2010) PLoS Comput Biol 6

PubMed: 20072606 | PubMedCentral: PMC2796266 | DOI: 10.1371/journal.pcbi.1000636

Trypsin family The ASC model for the trypsin family was built using a crystal structure of a serine protease (PDB-Id: 1AQ7, [34] ) and a distance cutoff of 5 Å.

Publication Year: 2010


VASP: a volumetric analysis of surface properties yields insights into protein-ligand binding specificity.

(2010) PLoS Comput Biol 6

PubMed: 20814581 | PubMedCentral: PMC2930297 | DOI: 10.1371/journal.pcbi.1000881

Each line plots the average volume of intersection (vertical axis) of individual residues of trypsins in our dataset (pdb: 1a0j, 1aks, 1ane, 1aq7, 1bzx, 1fn8, 1h4w, 1trn, 2eek, 2f91, horizontal axis) ... ith the S1 subsite of chymotrypsin (pdb: 8gch).

A plot of the average volume of intersection (Vertical axis) of individual trypsin amino acids (pdb: 1a0j, 1aks, 1ane, 1aq7, 1bzx, 1fn8, 1h4w, 1trn, 2eek, 2f91, horizontal axis) and the S1 subsite of chymotrypsin (pdb: 8gch), computed at five different resolutions (colored lines).

Publication Year: 2010


S46 peptidases are the first exopeptidases to be members of clan PA.

(2014) Sci Rep 4

PubMed: 24827749 | PubMedCentral: PMC4021333 | DOI: 10.1038/srep04977

(C) Trypsin complexed with an inhibitor, AERUGINOSIN 98-B (PDB ID: 1AQ7).

Publication Year: 2014