Citations in PubMed

Primary Citation PubMed: 7569952 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 4

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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Prediction of catalytic residues using Support Vector Machine with selected protein sequence and structural properties.

(2006) BMC Bioinformatics 7

PubMed: 16790052 | PubMedCentral: PMC1534064 | DOI: 10.1186/1471-2105-7-312

The 79 proteins (identified by the PDB code) were: 1a26, 1a4i, 1a4s, 1ab8, 1ae7, 1afw, 1ah7, 1akm, 1aop, 1apx, 1apy, 1aq2, 1aw8, lb3r, lb57, lb93, 1bo1, 1brm, 1bs4, 1btl, 1bzy, 1cd5, 1chd, 1ctt, 1d4a,... 1daa, 1dae, 1db3, 1dbt, 1dco, 1diz, 1dj0, 1dnk, 1dnp, 1dqs, 1dzr, 1e2a, 1ef8, 1eyi, 1fua, 1gim, 1gpm, 1gpr, 1grc, 1hxq, 1iph, 1jdw, 1kas, 1kra, 1lba, 11xa, 1mbb, 1mek, 1mla, 1moq, 1mpy, 1nba, 1nsp, 1pfk, 1pjb, 1pnl, 1pud, 1qfe, 1smn, 1uae, 1ula, 1uok, 1uox, 1wgi, 1xva, 2acy, 2alr, 2bbk, 2cpo, 2hgs, 2jcw, 2pfl, 2plc, 3eca.

Publication Year: 2006


ResBoost: characterizing and predicting catalytic residues in enzymes.

(2009) BMC Bioinformatics 10

PubMed: 19558703 | PubMedCentral: PMC2713229 | DOI: 10.1186/1471-2105-10-197

In summary, the PDB ID's for the proteins (and their included chain) are: 1qdl-A , 1b8g-B , 1fps , 1mfp-A , 1arz-A , 1d3g-A , 1qb4-A , 1kas , 1a7u-A , 1dii-A , 1grc-A , 1uag , 1zio , 1ay4-A , 1bou-B ,... 1b73-A , 1q91-A , 1daa-A , 1cd5-A , 1aq0-A , 1fdy-A , 1ecx-A , 1qba , 1kc7-A , 1pja-A , 1hdh-A , 1geq-B , 1exp , 1aql-A , 1b66-A , 1qum-A , 1d7r-A , 1qd6-C , 1cz1-A , 5enl , 1ah7 , 1pmi , 1og1-A , 1tph-1 , 1ey2-A , 1ahj-A , 1pnl-B , 1ir3-A , 1oe8-B , 1d0s-A , 1gim , 1std , 1a0i , 1aop , 1qcn-B , 1get-B , 1uqt-A , 1m6k-A , 1trk-A , 1sme-A , 2ts1 , 1ps9-A , 1ecl , 1ef0-A , 1aj0 , 2dhn , 1akd , 7odc-A , 135l , 1fcb-A , 1cbg , 1f8m-A , 1aj8-A , 1cel-A , 1l8t-A , 1jms-A , 1mrq-A , 1qh9-A , 1mlv-B , 1mhl-D , 1f75-A , 1d6o-A , 1b57-A , 1chd , 1bwz-A , 1nln-A , 1nba-A , 1cmx-A , 1xik-B , 1lnh , 1opm-A , 1lxa , 1a50-B , 1yve-L , 1d2r-A , 1bt1-A , 1ab8-A , 1dbt-A , 1amo-A , 1p4r-A , 1eyp-A , 1do8-A , 1oyg-A , 1rbn , and 1qmh-B .

Publication Year: 2009


The N-terminus of the human RecQL4 helicase is a homeodomain-like DNA interaction motif.

(2012) Nucleic Acids Res 40

PubMed: 22730300 | PubMedCentral: PMC3458545 | DOI: 10.1093/nar/gks591

Furthermore, the structural alignment covered essentially the complete target domains in contrast to other sporadic DALI hits such as helix-turn-helix motifs of the chromosome partition protein MukB (... EUK) or the site-specific recombinase XerD (1AOP), where only a small fraction of the target sequence could be superimposed onto RecQL4_N54.

Publication Year: 2012


The Universal Protein Resource (UniProt).

(2005) Nucleic Acids Res 33

PubMed: 15608167 | PubMedCentral: PMC540024 | DOI: 10.1093/nar/gki070

PIR site rules for automated annotation of functional sites Rule ID Template ID Rule condition Feature for propagation Reference PIRSR000259-1 UniProt:P17846 PDB:1AOP PIRSF000259 member Site match: Ar... 82, Arg152, Lys214, Lys216, Cys433, Cys439, Cys478, Cys482 ACT_SITE (catalytic): Arg82, Arg152, Lys214, Lys216, Cys482 CSA:1AOP PMID:9315848, 9315849 PIRSR000259-2 UniProt:P17846 PDB:1AOP PIRSF000259 member Site match: Arg82, Arg152, Lys214, Lys216, Cys433, Cys439, Cys478, Cys482 BINDING (4Fe-4S cluster): Cys433, Cys439, Cys478, Cys482 PMID:7569952 PIRSR000259-3 UniProt:P17846 PDB:1AOP PIRSF000259 member Site match: Arg82, Arg152, Lys214, Lys216, Cys433, Cys439, Cys478, Cys482 BINDING (Siroheme iron): Cys 482 PMID:7569952 ACKNOWLEDGEMENTS UniProt is mainly supported by the National Institutes of Health (NIH) grant 1 U01 HG02712-01.

Publication Year: 2005