Primary Citation PubMed: 7783202
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Joint evolutionary trees: a large-scale method to predict protein interfaces based on sequence sampling.
(2009) PLoS Comput Biol 5
PubMed: 19165315 | PubMedCentral: PMC2613531 | DOI: 10.1371/journal.pcbi.1000267
Allophycocyanin structure (PDB file 1all:B).
Structures: allophycocyanin 1all:B (A), phosphotransferase 1apm:E (B), human CDC42 gene regulation protein 1grn:AB (C), oncogene protein 1ycr (D), signal transduction protein 1shc (E), large fragment of Thermus aquaticus DNA polymerase I 2ktq (with the DNA chain in yellow) (F).
Publication Year: 2009
MM-align: a quick algorithm for aligning multiple-chain protein complex structures using iterative dynamic programming.
(2009) Nucleic Acids Res 37
PubMed: 19443443 | PubMedCentral: PMC2699532 | DOI: 10.1093/nar/gkp318
The first target complex is from the protein allophycocyanin (PDB ID: 1all), a light harvesting protein ( 26 ) found in the cyanobacterium Spirulina platensis .
ProBiS: a web server for detection of structurally similar protein binding sites.
(2010) Nucleic Acids Res 38
PubMed: 20504855 | PubMedCentral: PMC2896105 | DOI: 10.1093/nar/gkq479
Conserved binding sites and two different local structural alignments (the two insets) of the query allophycocyanin (PDB ID: 1all) with a retrieved similar protein (PDB ID: 1phn) are shown.
Publication Year: 2010
Watching conformational- and photo-dynamics of single fluorescent proteins in solution.
(2010) Nat Chem 2
PubMed: 20625479 | PubMedCentral: PMC2899709 | DOI: 10.1038/nchem.545
Produced from PDB structure 1ALL.
PubMed ID is not available.
Published in 2015
The atomic coordinates of PCB chromophores in the known APC structures (PDB IDs: 1ALL, 1KN1, 1B33, 2V8A, 2VJT, 3DBJ and 4F0U) were superposed onto the PCB chromophore of Phormidium APC by Chimera suit... .
platensis (PDB ID: 1ALL), T .
APCS, Phormidium ; 1ALL, Spirulina platensis ; 1KN1, Porphyra yezoensis ; 2V8A, Thermosynechococcus Elongatus ; 2VJT, Gloeobacter Violaceus ; 3DBJ, Thermosynechococcus vulcanus ; 4F0U, Synechococcus elongatus PCC 7942.
Publication Year: 2015
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