Primary Citation PubMed: 9792097
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Prediction of catalytic residues using Support Vector Machine with selected protein sequence and structural properties.
(2006) BMC Bioinformatics 7
PubMed: 16790052 | PubMedCentral: PMC1534064 | DOI: 10.1186/1471-2105-7-312
The 79 proteins (identified by the PDB code) were: 1a26, 1a4i, 1a4s, 1ab8, 1ae7, 1afw, 1ah7, 1akm, 1aop, 1apx, 1apy, 1aq2, 1aw8, lb3r, lb57, lb93, 1bo1, 1brm, 1bs4, 1btl, 1bzy, 1cd5, 1chd, 1ctt, 1d4a,... 1daa, 1dae, 1db3, 1dbt, 1dco, 1diz, 1dj0, 1dnk, 1dnp, 1dqs, 1dzr, 1e2a, 1ef8, 1eyi, 1fua, 1gim, 1gpm, 1gpr, 1grc, 1hxq, 1iph, 1jdw, 1kas, 1kra, 1lba, 11xa, 1mbb, 1mek, 1mla, 1moq, 1mpy, 1nba, 1nsp, 1pfk, 1pjb, 1pnl, 1pud, 1qfe, 1smn, 1uae, 1ula, 1uok, 1uox, 1wgi, 1xva, 2acy, 2alr, 2bbk, 2cpo, 2hgs, 2jcw, 2pfl, 2plc, 3eca.
Publication Year: 2006
PubMed ID is not available.
Published in 2015
Although BADHs have been characterized in Escherichia coli ( Ec BADH; PDB entries 1wnb and 1wnd ; Falkenberg & Strøm, 1990 ▶ ; Gruez et al. , 2004 ▶ ), B. subtilis (Boc... et al. , 1997 ▶ ), Halomonas elongata DSM 3043 (Cánovas et al. , 2000 ▶ ), Pseudoalteromonas atlantica T6c (PDB entry 3k2w ; New York SGX Research Center for Structural Genomics, unpublished work), Agrobacterium tumefaciens ( At BADH; PDB entry 3r31 ; New York Structural Genomics Research Consortium, unpublished work), P. aeruginosa ( Pa BADH; PDB entries 2wme , 2wox , 2xdr and 3zqa ; González-Segura et al. , 2009 ▶ ; Díaz-Sánchez et al. , 2011; A. G. Díaz-Sánchez, L. González-Segura, E. Rudiño-Piñera, A. Lira-Rocha, A. Torres-Larios & R. A. Muñoz-Clares, unpublished work) and in eukaryotic organisms such as Gadus morhua ( Gm BADH; PDB entries 1a4s and 1bpw ; Johansson et al. , 1998 ▶ ), Pisum sativum ( Ps BADH; PDB entries 3iwk and 3imj ; Tylichová et al. , 2010 ▶ ), Spinacia oleracae ( So BADH; PDB entry 4a0m ; Díaz-Sánchez et al. , 2012 ▶ ) and Solanum lycopersicum ( Sl BADH; PDB entries 4i8p , 4i9b and 4i8q ; Kopečny et al. , 2013 ▶ ), questions remain about the molecular mechanism of action of BADH.
Publication Year: 2015
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