Primary Citation PubMed: 8568892
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Protein structure similarity from Principle Component Correlation analysis.
(2006) BMC Bioinformatics 7
PubMed: 16436213 | PubMedCentral: PMC1386710 | DOI: 10.1186/1471-2105-7-40
The atomic coordinates were retrieved from PDB with accession codes 1A4F, 1A6G, 1COL (A), 1DDB (A), 1F16 (A), 1G5M (A), 1GJH (A), 1MAZ, 1MDT (A), and 2BID (A), where (A) means chain A. Set II is also ... mainly alpha" and has the same architecture as Set I, including structures 1CK7 (A), 1CXW (A), 1E8B (A), 1E88 (A), 1J7M (A), 1KS0 (A), 1PDC, and 2FN2.
Publication Year: 2006
FeatureMap3D--a tool to map protein features and sequence conservation onto homologous structures in the PDB.
(2006) Nucleic Acids Res 34
PubMed: 16845115 | PubMedCentral: PMC1538770 | DOI: 10.1093/nar/gkl227
This figure illustrates the mapping of the protein sequence and underlying exon structure of Columba livia (domestic pigeon) Alpha-A globin onto the PDB structure 1A4F [ 17 ], which contains the Alpha... Beta-globin dimer from Anser indicus (bar-headed goose).
The topmost sequence is the query sequence (Alpha-D), the sequence below is the PDB hit sequence (1A4F, chain a).
Teaching the ABCs of bioinformatics: a brief introduction to the Applied Bioinformatics Course.
(2014) Brief Bioinform 15
PubMed: 24008274 | PubMedCentral: PMC4239802 | DOI: 10.1093/bib/bbt065
During the past decade, a research group at our university has solved the crystal structure of both the deoxy (PDB ID: 1HV4) and the oxy (PDB ID: 1A4F) form of the bar-headed goose hemoglobin, as well... as the oxy form (PDB ID: 1FAW) of the graylag goose hemoglobin.
Publication Year: 2014
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