Citations in PubMed

Primary Citation PubMed: 9430589 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 8

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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Inhibitory effects of archetypical nucleic acid ligands on the interactions of HIV-1 nucleocapsid protein with elements of Psi-RNA.

(2006) Nucleic Acids Res 34

PubMed: 16522643 | PubMedCentral: PMC1390681 | DOI: 10.1093/nar/gkl004

Figure 8 High-resolution structures of ( a ) NC•SL3 (PDB:1A1T) and ( b ) NC•SL2 (PDB:1F6U).

Publication Year: 2006

Flexible segments modulate co-folding of dUTPase and nucleocapsid proteins.

(2007) Nucleic Acids Res 35

PubMed: 17169987 | PubMedCentral: PMC1802613 | DOI: 10.1093/nar/gkl1074

The central panel represents superposition of ab initio models of the free NC domain in solution and of this domain in complex with the oligonucleotide (yellow and grey beads, respectively) and NMR-de... ived models of these constructs (purple and red backbones for first models in the PDB files 1AAF and 1A1T, respectively).

The high-resolution models were retrieved from the Brookhaven Protein Data Bank ( 12 ) (PDB): dUTPase 2AKV, NC domain with oligonucleotide 1A1T, model 1 ( 13 ) and free NC 1AAF, model 1 ( 14 ).

In contrast, NC in complex with oligonucleotide has a much bulkier appearance, larger excluded volume and is well superimposed with the relatively compact atomic model of this complex obtained by NMR (1A1T, 1AAF) ( 30 ).

Publication Year: 2007

Evolutionary modeling of rate shifts reveals specificity determinants in HIV-1 subtypes.

(2008) PLoS Comput Biol 4

PubMed: 18989394 | PubMedCentral: PMC2566816 | DOI: 10.1371/journal.pcbi.1000214

Thus, the following structures were used: Gag derived proteins: matrix p17, capsid p24, nucleocapsid p7 (PDB IDs: 1tam, 1e6j, 1a1t, respectively); Pol derived proteins: protease p10, reverse transcrip... ase p51, RNase p15, integrase p31 (PDB IDs: 1aaq, 1rtd, 1o1w, 2itg, respectively); Vpr p12/p10 (PDB ID: 1m8l); Tat p16/p14 (PDB ID: 1mnb); Rev p19 (PDB ID: 1etf); Vpu p16 (PDB ID: 1vpu); Env derived proteins: gp120, gp41 (PDB IDs: 1gc1, 1env, respectively); Nef p27/p25 (PDB ID: 2nef).

Publication Year: 2008

Sensing peptide-oligonucleotide interactions by a two-color fluorescence label: application to the HIV-1 nucleocapsid protein.

(2009) Nucleic Acids Res 37

PubMed: 19151084 | PubMedCentral: PMC2647317 | DOI: 10.1093/nar/gkn1083

( 53 , 77 , 76 ) corresponding to PDB structures: 1A1T, 1BJ6, 2EXF, respectively].

Publication Year: 2009

Targeting RNA-protein interactions within the human immunodeficiency virus type 1 lifecycle.

(2013) Biochemistry 52

PubMed: 24358934 | PubMedCentral: PMC3928988 | DOI: 10.1021/bi401270d

The binding of HIV-1 NC protein to the RNA SL3 has been well characterized by 1 H NMR spectroscopy (PDB 1A1T, Figure 3 B).

(B) 3-D model of the HIV-1 nucleocapsid–WT-3 complex (PDB 1A1T) depicting the protein and the RNA hairpin with a green and white ribbon, respectively.

Publication Year: 2013

Dynamics of linker residues modulate the nucleic acid binding properties of the HIV-1 nucleocapsid protein zinc fingers.

(2014) PLoS One 9

PubMed: 25029439 | PubMedCentral: PMC4100767 | DOI: 10.1371/journal.pone.0102150

(a) SL3-NC (pdb 1a1t); (b) PBS-NC (2exf); (c) SL2-NC (1f6u); (d) mini-cTAR-NC (2l4l).

Publication Year: 2014

Functional conservation of HIV-1 Gag: implications for rational drug design.

(2013) Retrovirology 10

PubMed: 24176092 | PubMedCentral: PMC4228425 | DOI: 10.1186/1742-4690-10-126

Figure (C) shows the structural complex of nucleocapsid and RNA (left, PDB: 1A1T) and the structural complex of nucleocapsid and inhibitor CAA (right, PDB: 2M3Z).

Publication Year: 2013

A new ensemble coevolution system for detecting HIV-1 protein coevolution.

(2015) Biol Direct 10

PubMed: 25564011 | PubMedCentral: PMC4332441 | DOI: 10.1186/s13062-014-0031-8

The PDB dataset included: 1HIW (matrix), 3H4E (capsid), 1A1T (nucleocapsid), 2C55 (p6) and 1TW7 (protease).

Publication Year: 2015