Primary Citation PubMed: 9461075
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Structural basis of differential neutralization of DENV-1 genotypes by an antibody that recognizes a cryptic epitope.
(2012) PLoS Pathog 8
PubMed: 23055922 | PubMedCentral: PMC3464233 | DOI: 10.1371/journal.ppat.1002930
The model of DENV complexed with the 1A1D-2 Fab (PDB 2R6P) is shown in Figure 5C .
The atomic structures of the ( A ) mature (PDB 1K4R), ( B ) immature (PDB 3C6D), and ( C ) 1A1D-2-bound DENV-2 (PDB 2R6P) are shown as determined by modeling of cryo electron-microscopy reconstructions.
The coordinates for the full mature (PDB 1KR4), immature (PDB 3C6D), and 1A1D-2-bound (PDB 2R6P) DENV-2 virus assemblies were downloaded from VIPERdb  ( http://viperdb.scripps.edu/ ).
In panel C , the 1A1D-2 Fabs were removed from the deposited cryo-electron microscopy structure to show only the antibody-stabilized virus conformation.
Publication Year: 2012
Rational engineering of a human anti-dengue antibody through experimentally validated computational docking.
(2013) PLoS One 8
PubMed: 23405171 | PubMedCentral: PMC3566030 | DOI: 10.1371/journal.pone.0055561
In fact, steric clashes between DV32.6 and neighbouring E proteins are present when superimposing our models to the mature structure of the full virus, whereas no clash is detected when superimposing ... ur models to the structure of the virus in complex with 1A1D-2.
Publication Year: 2013
Structure of Rhodococcus equi virulence-associated protein B (VapB) reveals an eight-stranded antiparallel ?-barrel consisting of two Greek-key motifs.
(2014) Acta Crystallogr F Struct Biol Commun 70
PubMed: 25005079 | PubMedCentral: PMC4089522 | DOI: 10.1107/S2053230X14009911
This protein (RNA polymerase subunit RPB8; PDB entry 1a1d ; Krapp et al. , 1998 ▶ ) has strand order 32148567 (Fig. 3 ▶ c ) and is structurally unrelated to VapB.
Publication Year: 2014
Recognition of heparan sulfate by clinical strains of dengue virus serotype 1 using recombinant subviral particles.
(2013) Virus Res 176
PubMed: 23707399 | PubMedCentral: PMC4145673 | DOI: 10.1016/j.virusres.2013.04.017
Briefly, DNA sequences of 1A1D-2 heavy chain and light chain variable regions (PDB accession 2R69) were synthesized (DNA 2.0) and cloned into pcDNA 3.3 plasmids harboring human heavy chain and light c... ain constant region sequences, respectively.
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