Citations in PubMed

Primary Citation PubMed: 15299672 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 7

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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A 7?m mini-beam improves diffraction data from small or imperfect crystals of macromolecules.

(2008) Acta Crystallogr D Biol Crystallogr 64

PubMed: 18391409 | PubMedCentral: PMC2631116 | DOI: 10.1107/S0907444908001741

Coordinates with PDB codes 193l and 1rqw were used as starting models for the refinement of lysozyme and thaumatin, respectively.

Publication Year: 2008


Robust structure-based resonance assignment for functional protein studies by NMR.

(2010) J Biomol NMR 46

PubMed: 20024602 | PubMedCentral: PMC2813526 | DOI: 10.1007/s10858-009-9390-3

Erroneous NOEs were generated by adding to experimental data randomly simulated NOEs corresponding to medium or long distances in the lysozyme X-ray structure 193L and classified incorrectly as short ... r medium NOEs, respectively.

The X-ray structure 193L (PDB code) (Vaney et al.

Publication Year: 2010


Improved fitting of solution X-ray scattering data to macromolecular structures and structural ensembles by explicit water modeling.

(2010) J Am Chem Soc 132

PubMed: 20958032 | PubMedCentral: PMC2974370 | DOI: 10.1021/ja106173n

From top to bottom, data sets correspond to GB3, cytochrome C, lysozyme, and ubiquitin (PDB entries 1IGD, 1CRC, 193L, and 1D3Z).

Publication Year: 2010


Residual dipolar couplings: are multiple independent alignments always possible?

(2011) J Biomol NMR 49

PubMed: 21184138 | PubMedCentral: PMC3020303 | DOI: 10.1007/s10858-010-9457-1

 3 Surface representations of a HEWL (pdb code 193L (Vaney et al.

The alignment tensors were fitted using the 193L HEWL crystal structure (Vaney et al.

  1 a shows the relative orientations of the eight alignment tensors alongside the 193L crystal structure rotated into each of these co-ordinate frames.

Table 1 HEWL alignment tensors determined by fitting to the 193L crystal structure (Vaney et al.

Publication Year: 2011


BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions.

(2013) Nucleic Acids Res 41

PubMed: 23087378 | PubMedCentral: PMC3531193 | DOI: 10.1093/nar/gks966

However, the sodium ion in the protein ‘tetragonal hen egg-white lysozyme’ (PDB ID: 193L) is assessed as biologically relevant in BioLiP, with its biological role (‘stabilizing... the loop Ser60-Leu75’) described in the PubMed abstract (PubMed ID: 15299672).

Publication Year: 2013


Microscopic mechanism of protein cryopreservation in an aqueous solution with trehalose.

(2013) Sci Rep 3

PubMed: 23390573 | PubMedCentral: PMC3565168 | DOI: 10.1038/srep01218

The geometrical structure of the lysozyme is obtained from crystallographic experimental data 56 (Protein Data Bank entry 193L).

Publication Year: 2013


PubMed ID is not available.

Published in 2015

PubMedCentral: PMC4448500

The structure was solved by molecular replacement using the lysozyme model PDB 193L 29 as a template with Phaser 26 , manually built with Coot 30 , and refined with Phenix 27 .

Since the structure for lysozyme is known, molecular replacement and automatic refinement could be performed for each selection, with the PHENIX software suite 26 27 using as template the structure with PDBID 193L 29 .

Publication Year: 2015