Citations in PubMed

Primary Citation PubMed: 8263919 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 4

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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Effects of abasic sites on structural, thermodynamic and kinetic properties of quadruplex structures.

(2010) Nucleic Acids Res 38

PubMed: 20026588 | PubMedCentral: PMC2847214 | DOI: 10.1093/nar/gkp1087

The initial coordinates for the starting model of the quadruplex [d(TGGGGGT)] 4 were taken from the NMR solution structure of the quadruplex [d(TTGGGGT)] 4 (Protein Data Bank entry number 139D), choos... ng randomly one of the four available structures.

Publication Year: 2010


Explaining the varied glycosidic conformational, G-tract length and sequence preferences for anti-parallel G-quadruplexes.

(2011) Nucleic Acids Res 39

PubMed: 21296760 | PubMedCentral: PMC3105399 | DOI: 10.1093/nar/gkr031

The (3SAA + 1SSA) model was built from the human telomeric G-quadruplex 2GKU ( 34 ); AAA was built from the first three G-quartets of the NMR parallel structure 139D ( 35 ).

The respective coordinates were taken from the first and the second G-quartets of the parallel quadruplex d(TTGGGGT) 4 NMR solution structure [( 35 ); PDB: 139D; the first model was used].

Publication Year: 2011


Insight into G-DNA structural polymorphism and folding from sequence and loop connectivity through free energy analysis.

(2011) J Am Chem Soc 133

PubMed: 21761922 | PubMedCentral: PMC3168932 | DOI: 10.1021/ja107805r

( 56 ) Methods Starting Structures All of the L n , L w , D , and P 3 a models were built from the NMR structure 2GKU ;( 56 ) the P 2 a models were built from the 1L34 structure;( 57 ) the P 4 a stems... were built from the crystal structure 1JPQ with two loop K + ions removed from the initial structure;( 58 ) and the stem structures of the P 3 p / P 4 p models were obtained from the first three/four G-quartets of the 139D structure, respectively.

Publication Year: 2011


The insertion of two 8-methyl-2'-deoxyguanosine residues in tetramolecular quadruplex structures: trying to orientate the strands.

(2012) Nucleic Acids Res 40

PubMed: 21908403 | PubMedCentral: PMC3245916 | DOI: 10.1093/nar/gkr670

In all cases, with the exception of F13 , the initial coordinates for the starting models of the quadruplexes [d(TGGGGT)] 4 and [d(TGGGT)] 4 (for the G4-run and G3-run series, respectively) were taken... from the NMR solution structure of the quadruplex [d(TTGGGGT)] 4 (Protein Data Bank entry number 139D), with one of the four available structures chosen randomly.

Publication Year: 2012