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PyDeT, a PyMOL plug-in for visualizing geometric concepts around proteins.
(2008) Bioinformation 2
PubMed: 18685723 | PubMedCentral: PMC2478735 | DOI: null
On figure 1 this happens twice in one of the α helices of the protein found in the PDB entry 101m.
Publication Year: 2008
PDB_REDO: automated re-refinement of X-ray structure models in the PDB.
(2009) J Appl Crystallogr 42
PubMed: 22477769 | PubMedCentral: PMC3246819 | DOI: 10.1107/S0021889809008784
Table 1 Data set selection and re-refinement PDB entries (January 2007) 41277 X-ray structure models 35003 X-ray + 2.70 resolution 29541 X-ray + experimental data (SF) 20889 X-ray + SF + R -free set 1... 877 X-ray + SF + usable R -free set 16807 Re-refined structure models 15034 Improved structure models 10046 Table 2 Status flag schemes for R -free set selection encountered in deposited reflection files at the wwPDB Scheme Working set R -free set Example PDB entry † 1 o f 1aa6 (1dzi) 2 0 1 101m (1a4i) 3 1 1 1a8d 4 Positive integer 0 1b7d 5 Positive real number 0.00 1c3c 6 1.0 0.0 1a27 † PDB identifiers in parentheses are examples of reversed usage of the scheme.
Publication Year: 2009
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