1Q5A

S-shaped trans interactions of cadherins model based on fitting C-cadherin (1L3W) to 3D map of desmosomes obtained by electron tomography


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 30.0 Å
  • Aggregation State: Tissue
  • Reconstruction Method: Tomography

Literature

Macromolecules
Sequence Display for 1Q5A

Classification: STRUCTURAL PROTEIN

Total Structure Weight: 203104.81

Macromolecule Entities
Molecule Chains Length Organism Details
EP-cadherin A, B 880 Mus musculus Fragment: residues 1-546 of PDB entry 1L3W
Details: rigid body fit by C-cadherin from PDB entry 1L3W

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NDG
Query on NDG

A, B 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
C8 H15 N O6
OVRNDRQMDRJTHS-PVFLNQBWSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NAG
Query on NAG

A, B N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 30.0 Å
  • Reconstruction Method: Tomography

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-08-06
  • Released Date: 2003-10-07
  • Deposition author(s): He, W., Cowin, P., Stokes, D.L.

Revision History

  • Version 1_0: 2003-10-07

    Type: Initial release

  • Version 1_1: 2007-10-16

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Non-polymer description, Version format compliance