1PZL

Crystal structure of HNF4a LBD in complex with the ligand and the coactivator SRC-1 peptide

Structural Biology Knowledgebase: 1PZL SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.267
  • R-Value Work: 0.226

Literature

Macromolecules
Sequence Display for 1PZL

Classification: TRANSCRIPTION

Total Structure Weight: 28578.47

Macromolecule Entities
Molecule Chains Length Organism Details
Hepatocyte nuclear factor 4-alpha A 237 Homo sapiens Fragment: HNF4A-LDB
Mutation: D137L, S138A
Gene Name(s): HNF4A Gene View HNF4 NR2A1 TCF14
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
steroid receptor coactivator-1 B 14 Homo sapiens EC#: 2.3.1.48 IUBMB
Fragment: NRbox2 peptide of SRC-1
Gene Name(s): NCOA1 Gene View BHLHE74 SRC1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MYR
Query on MYR

A MYRISTIC ACID
C14 H28 O2
TUNFSRHWOTWDNC-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.267
  • R-Value Work: 0.226
  • Space Group: P 41 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 81.49 α = 90.00
b = 81.49 β = 90.00
c = 104.71 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-07-11
  • Released Date: 2004-06-01
  • Deposition author(s): Duda, K., Chi, Y.-I., Dhe-paganon, S., Shoelson, S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4