1PZG

T.gondii LDH1 complexed with APAD and sulfate at 1.6 Angstroms


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.198
  • R-Value Work: 0.176

Literature

Macromolecules
Sequence Display for 1PZG

Classification: OXIDOREDUCTASE

Total Structure Weight: 146300.59

Macromolecule Entities
Molecule Chains Length Organism Details
lactate dehydrogenase A, B, C, D 331 Toxoplasma gondii EC#: 1.1.1.27 IUBMB
Mutation: C150X
Gene Name(s): LDH1 TGGT1_232350 TGME49_232350 TGVEG_232350
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
A3D
Query on A3D

A, B, C, D 3-ACETYLPYRIDINE ADENINE DINUCLEOTIDE
C22 H28 N6 O14 P2
KPVQNXLUPNWQHM-RBEMOOQDSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B, C, D SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
A3D N/A in BindingDB
Ki: 25000000 nM  BindingMOAD
N/A in PDBbind
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
CME
Query on CME
A, B, C, D L-PEPTIDE LINKING C5 H11 N O3 S2 CYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.198
  • R-Value Work: 0.176
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 67.93 α = 90.00
b = 124.98 β = 105.94
c = 86.39 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-07-10
  • Released Date: 2004-02-24
  • Deposition author(s): Kavanagh, K.L., Elling, R.A., Wilson, D.K.

Revision History

  • 2008-04-29
    Type: Version format compliance
  • 2011-07-13
    Type: Source and taxonomy, Version format compliance