1PZ8

Modulation of agrin function by alternative splicing and Ca2+ binding


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.260
  • R-Value Work: 0.218

Literature

Macromolecules
Sequence Display for 1PZ8

Classification: STRUCTURAL PROTEIN

Total Structure Weight: 88368.50

Macromolecule Entities
Molecule Chains Length Organism Details
Agrin A, B, C, D 201 Gallus gallus Mutation: P33H, D34L, A35S, L36N, D37E, Y38I, ΔP1793, ΔS1794, ΔE1795
Gene Name(s): AGRN Gene View AGRIN
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CA
Query on CA

A, B, C, D CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.260
  • R-Value Work: 0.218
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 76.85 α = 90.00
b = 56.56 β = 99.75
c = 84.59 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-07-10
  • Released Date: 2004-04-13
  • Deposition author(s): Stetefeld, J., Alexandrescu, A.T., Maciejewski, M.W., Jenny, M., Rathgeb-Szabo, K., Schulthess, T., Landwehr, R., Frank, S., Ruegg, M.A., Kammerer, R.A.

Revision History

  • Version 1_0: 2004-04-13

    Type: Initial release

  • Version 1_1: 2008-04-29

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance