1PYM

PHOSPHOENOLPYRUVATE MUTASE FROM MOLLUSK IN WITH BOUND MG2-OXALATE

Structural Biology Knowledgebase: 1PYM SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.188

Literature

Macromolecules
Sequence Display for 1PYM

Classification: PHOSPHOTRANSFERASE

Total Structure Weight: 66790.48

Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN (PHOSPHOENOLPYRUVATE MUTASE) A, B 295 Mytilus edulis EC#: 5.4.2.9 IUBMB
Details: WITH BOUND MG2+-OXALATE INHIBITOR
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
OXL
Query on OXL

A, B OXALATE ION
C2 O4
MUBZPKHOEPUJKR-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.188
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 90.40 α = 90.00
b = 131.10 β = 90.00
c = 90.90 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-02-25
  • Released Date: 1999-07-21
  • Deposition author(s): Huang, K., Li, Z., Herzberg, O.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values