1PWD

Covalent acyl enzyme complex of the Streptomyces R61 DD-peptidase with cephalosporin C


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.2 Å
  • R-Value Free: 0.166
  • R-Value Work: 0.124

Literature

Macromolecules
Sequence Display for 1PWD

Classification: HYDROLASE / Antibiotic

Total Structure Weight: 37840.01

Macromolecule Entities
Molecule Chains Length Organism Details
D-alanyl-D-alanine carboxypeptidase precursor A 349 Streptomyces sp. r61 EC#: 3.4.16.4 IUBMB
Fragment: DD-PEPTIDASE
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
0MU
Query on 0MU

A (2R)-5-(acetyloxymethyl)-2-[(1R)-1-[[(5R)- 5-azanyl-6-oxidanyl-6-oxidanylidene-hexanoyl]amino]- 2-oxidanylidene-ethyl]-5,6-dihydro-2H-1,3- thiazine-4-carboxylic acid
bound form, (Synonym)
C16 H23 N3 O8 S
KPDUYBJZYVMEKK-ICUOPCATSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.2 Å
  • R-Value Free: 0.166
  • R-Value Work: 0.124
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 51.00 α = 90.00
b = 67.00 β = 90.00
c = 100.00 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-07-01
  • Released Date: 2004-07-13
  • Deposition author(s): Silvaggi, N.R., Josephine, H.R., Pratt, R.F., Kelly, J.A.

Revision History

  • 2008-04-29
    Type: Version format compliance
  • 2011-07-13
    Type: Source and taxonomy, Version format compliance