1PW5

putative nagD protein


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.279
  • R-Value Work: 0.244

Literature

Macromolecules
Sequence Display for 1PW5

Classification: STRUCTURAL GENOMICS UNKNOWN FUNCTION

Total Structure Weight: 28973.24

Macromolecule Entities
Molecule Chains Length Organism Details
nagD protein, putative A 253 Thermotoga maritima EC#: 3.1.3 IUBMB
Mutation: M1M, M12M, M61M, M81M, M166M, M203M, M205M
Gene Name(s): TM_1742 Tmari_1750
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NDG
Query on NDG

A 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
C8 H15 N O6
OVRNDRQMDRJTHS-PVFLNQBWSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.279
  • R-Value Work: 0.244
  • Space Group: P 41 21 2

Unit Cell:

Length (Å) Angle (°)
a = 97.79 α = 90.00
b = 97.79 β = 90.00
c = 159.27 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-06-30
  • Released Date: 2004-03-02
  • Deposition author(s): Cuff, M.E., Skarina, T., Savchenko, A., Edwards, A., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Revision History

  • 2008-04-29
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance