1PW1

Non-Covalent Complex Of Streptomyces R61 DD-Peptidase With A Highly Specific Penicillin

Structural Biology Knowledgebase: 1PW1 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.2 Å
  • R-Value Free: 0.151
  • R-Value Work: 0.116

Literature

Macromolecules
Sequence Display for 1PW1

Classification: HYDROLASE

Total Structure Weight: 38188.69

Macromolecule Entities
Molecule Chains Length Organism Details
D-alanyl-D-alanine carboxypeptidase A 349 Streptomyces sp. r61 EC#: 3.4.16.4 IUBMB
Fragment: DD-PEPTIDASE
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEL
Query on HEL

A (2S,5R,6R)-6-{[(6R)-6-(GLYCYLAMINO)-7-OXIDO- 7-OXOHEPTANOYL]AMINO}-3,3-DIMETHYL-7-OXO- 4-THIA-1-AZABICYCLO[3.2.0]HEPTANE-2-CARBOXYLATE
C17 H25 N4 O7 S
LDJWRKFRKCXUDO-RBQWDTSBSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FOR
Query on FOR

A FORMYL GROUP
C H2 O
WSFSSNUMVMOOMR-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.2 Å
  • R-Value Free: 0.151
  • R-Value Work: 0.116
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 51.00 α = 90.00
b = 67.00 β = 90.00
c = 100.70 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-06-30
  • Released Date: 2004-07-13
  • Deposition author(s): Silvaggi, N.R., Josephine, H.R., Pratt, R.F., Kelly, J.A.

Revision History

  • 2011-07-13
    Type: Source and taxonomy | Details: Removed strain from scientific name
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4