1PVH

Crystal structure of leukemia inhibitory factor in complex with gp130

Structural Biology Knowledgebase: 1PVH SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.289
  • R-Value Work: 0.248

Literature

Macromolecules
Sequence Display for 1PVH

Classification: signaling protein / cytokine

Total Structure Weight: 83691.45

Macromolecule Entities
Molecule Chains Length Organism Details
Interleukin-6 receptor beta chain A, C 201 Homo sapiens Fragment: domains D2 and D3
Gene Name(s): IL6ST Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Leukemia inhibitory factor B, D 169 Homo sapiens Gene Name(s): LIF Gene View HILDA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
IOD
Query on IOD

A, D IODIDE ION
I
XMBWDFGMSWQBCA-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.289
  • R-Value Work: 0.248
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 79.71 α = 90.00
b = 86.70 β = 90.00
c = 146.43 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-06-27
  • Released Date: 2003-10-14
  • Deposition author(s): Boulanger, M.J., Bankovich, A.J., Kortemme, T., Baker, D., Garcia, K.C.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4