1PUY

1.5 A resolution structure of a synthetic DNA hairpin with a stilbenediether linker

Structural Biology Knowledgebase: 1PUY SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.204

Literature

Macromolecules
Sequence Display for 1PUY

Classification: DNA

Total Structure Weight: 8189.21

Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*GP*TP*TP*TP*TP*GP*(S02)P*CP*AP*AP*AP*AP*C)-3' A, B 13 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
S02
Query on S02
A, B NON-POLYMER C18 H31 O7 P --

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.204
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 29.89 α = 90.00
b = 41.86 β = 90.00
c = 51.10 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2003-06-25
  • Released Date: 2003-10-14
  • Deposition author(s): Egli, M., Tereshko, V., Murshudov, G., Sanishvili, R., Liu, X., Lewis, F.D.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4