1PUB

GM2-activator Protein crystal structure

Structural Biology Knowledgebase: 1PUB SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.51 Å
  • R-Value Free: 0.286
  • R-Value Work: 0.209

Literature

Macromolecules
Sequence Display for 1PUB

Classification: LIPID BINDING PROTEIN

Total Structure Weight: 18309.43

Macromolecule Entities
Molecule Chains Length Organism Details
GM2-activator protein A 162 Homo sapiens Gene Name(s): GM2A Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
3PH
Query on 3PH

A 1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE
PHOSPHATIDIC ACID (Synonym)
C39 H77 O8 P
YFWHNAWEOZTIPI-DIPNUNPCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.51 Å
  • R-Value Free: 0.286
  • R-Value Work: 0.209
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 40.07 α = 90.00
b = 42.42 β = 90.00
c = 113.78 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-06-24
  • Released Date: 2004-06-29
  • Deposition author(s): Wright, C.S., Zhao, Q., Rastinejad, F.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4