1PTJ

Crystal structure analysis of the DI and DIII complex of transhydrogenase with a thio-nicotinamide nucleotide analogue

Structural Biology Knowledgebase: 1PTJ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.61 Å
  • R-Value Free: 0.287
  • R-Value Work: 0.234

Literature

Macromolecules
Sequence Display for 1PTJ

Classification: OXIDOREDUCTASE

Total Structure Weight: 100586.62

Macromolecule Entities
Molecule Chains Length Organism Details
NAD(P) transhydrogenase subunit alpha part 1 A, B 381 Rhodospirillum rubrum EC#: 1.6.1.2 IUBMB
Gene Name(s): pntAA nntA1 Rru_A2183
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
NAD(P) transhydrogenase subunit beta C 174 Rhodospirillum rubrum EC#: 1.6.1.2 IUBMB
Fragment: residues 291-464
Gene Name(s): pntB nntB Rru_A2181
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAP
Query on NAP

C NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE (Synonym)
C21 H28 N7 O17 P3
XJLXINKUBYWONI-NNYOXOHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SND
Query on SND

A THIONICOTINAMIDE-ADENINE-DINUCLEOTIDE
C21 H27 N7 O13 P2 S
UQYPZLRUJKCREN-NNYOXOHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.61 Å
  • R-Value Free: 0.287
  • R-Value Work: 0.234
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 72.09 α = 90.00
b = 74.70 β = 90.00
c = 205.01 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-06-23
  • Released Date: 2003-10-07
  • Deposition author(s): Singh, A., Venning, J.D., Quirk, P.G., van Boxel, G.I., Rodrigues, D.J., White, S.A., Jackson, J.B.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update