1PQ6

HUMAN LXR BETA HORMONE RECEPTOR / GW3965 COMPLEX

Structural Biology Knowledgebase: 1PQ6 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.262
  • R-Value Work: 0.207

Literature

Macromolecules
Sequence Display for 1PQ6

Classification: transcription regulation

Total Structure Weight: 118096.40

Macromolecule Entities
Molecule Chains Length Organism Details
Oxysterols receptor LXR-beta A, B, C, D 253 Homo sapiens Fragment: Ligand binding domain, residues 213-461
Gene Name(s): NR1H2 Gene View LXRB NER UNR
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
965
Query on 965

A, B, D [3-(3-{[2-chloro-3-(trifluoromethyl)benzyl](2,2- diphenylethyl)amino}propoxy)phenyl]acetic acid
C33 H31 Cl F3 N O3
NAXSRXHZFIBFMI-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
IPA
Query on IPA

A, B ISOPROPYL ALCOHOL
2-PROPANOL (Synonym)
C3 H8 O
KFZMGEQAYNKOFK-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
965 EC50: 20 - 501 nM (100) BindingDB
IC50: 7.9 - 40 nM (100) BindingDB

N/A in BindingMoad
IC50: 7.94 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.262
  • R-Value Work: 0.207
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 58.72 α = 90.00
b = 98.93 β = 90.00
c = 175.82 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-06-18
  • Released Date: 2003-09-09
  • Deposition author(s): Farnegardh, M., Bonn, T., Sun, S., Ljunggren, J., Ahola, H., Wilhelmsson, A., Gustafsson, J.-A., Carlquist, M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update