1PO6

Crystal Structure of UP1 Complexed With d(TAGG(6MI)TTAGGG): A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6MI)

Structural Biology Knowledgebase: 1PO6 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.234

Literature

Macromolecules
Sequence Display for 1PO6

Classification: RNA Binding Protein / DNA

Total Structure Weight: 24393.02


Macromolecule Entities
Molecule Chains Length Organism Details
Heterogeneous nuclear ribonucleoprotein A1 A 183 Homo sapiens Fragment: residues 8-190
Gene Name(s): HNRNPA1 Gene View HNRPA1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*T*AP*GP*GP*(6MI)P*TP*TP*AP*GP*GP*G)-3' B 11 synthetic

Small Molecules
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
6MI
Query on 6MI
B DNA LINKING C12 H16 N5 O8 P --

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.234
  • Space Group: P 43 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 51.81 α = 90.00
b = 51.81 β = 90.00
c = 172.33 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-06-13
  • Released Date: 2003-11-11
  • Deposition author(s): Myers, J.C., Moore, S.A., Shamoo, Y.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4