1PL9

Crystal structure of KDO8P synthase in its binary complex with substrate analog Z-FPEP

Structural Biology Knowledgebase: 1PL9 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.327
  • R-Value Work: 0.233

Literature

Macromolecules
Sequence Display for 1PL9

Classification: TRANSFERASE

Total Structure Weight: 31058.94

Macromolecule Entities
Molecule Chains Length Organism Details
2-dehydro-3-deoxyphosphooctonate aldolase A 284 Escherichia coli EC#: 2.5.1.55 IUBMB
Gene Name(s): kdsA b1215 JW1206
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FPE
Query on FPE

A 3-FLUORO-2-(PHOSPHONOOXY)PROPANOIC ACID
C3 H6 F O6 P
BNOCDEBUFVJMQI-REOHCLBHSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.327
  • R-Value Work: 0.233
  • Space Group: I 2 3
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 117.06 α = 90.00
b = 117.06 β = 90.00
c = 117.06 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-06-08
  • Released Date: 2004-07-13
  • Deposition author(s): Vainer, R., Adir, N., Baasov, T., Belakhov, V., Rabkin, E.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values