1PKU

Crystal Structure of Nucleoside Diphosphate Kinase from Rice

Structural Biology Knowledgebase: 1PKU SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.263
  • R-Value Work: 0.208

Literature

Macromolecules
Sequence Display for 1PKU

Classification: TRANSFERASE

Total Structure Weight: 204475.64

Macromolecule Entities
Molecule Chains Length Organism Details
Nucleoside Diphosphate Kinase I A, B, C..., D, E, F, G, H, I, J, K, LA, B, C, D, E, F, G, H, I, J, K, L 150 Oryza sativa EC#: 2.7.4.6 IUBMB
Gene Name(s): NDKR Os07g0492000 LOC_Os07g30970 OJ1218_C12.24 OsJ_023347 P0038F10.104
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG


Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.263
  • R-Value Work: 0.208
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 70.95 α = 90.00
b = 182.94 β = 90.00
c = 188.03 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-06-06
  • Released Date: 2005-02-22
  • Deposition author(s): Huang, J.-Y., Chang, C.-Y., Chang, T., Chen, C.-J.

Revision History

  • 2014-04-23
    Type: Experimental method | Details: update crystallization condition
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4