1PG9

NMR Solution Structure of an Oxaliplatin 1,2-d(GG) Intrastrand Cross-Link in a DNA Dodecamer Duplex

Structural Biology Knowledgebase: 1PG9 SBKB.org


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 20
  • Conformers Submitted: 1
  • Selection Criteria: Closest to the Average

Literature

Macromolecules
Sequence Display for 1PG9

Classification: DNA

Total Structure Weight: 7637.11

Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*CP*CP*TP*CP*AP*GP*GP*CP*CP*TP*CP*C)-3' A 12 synthetic G6 and G7 are Cross-Linked by a cis-Pt compound, residue 1PT
5'-D(*GP*GP*AP*GP*GP*CP*CP*TP*GP*AP*GP*G)-3' B 12 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
1PT
Query on 1PT

A CYCLOHEXANE-1(R),2(R)-DIAMINE-PLATINUM(II)
OXALIPLATIN (Synonym)
C6 H14 N2 Pt
SGLJYTWMWIAGEU-NHVQHECABN
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 20
  • Conformers Submitted: 1
  • Selection Criteria: closest to the average

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2003-05-28
  • Released Date: 2004-07-06
  • Deposition author(s): Wu, Y., Pradhan, P., Havener, J., Chaney, S.G., Campbel, S.L.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4