1PG6

X-Ray Crystal Structure of Protein SPYM3_0169 from Streptococcus pyogenes. Northeast Structural Genomics Consortium Target DR2.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.244
  • R-Value Work: 0.213

Literature

Macromolecules
Sequence Display for 1PG6

Classification: STRUCTURAL GENOMICS UNKNOWN FUNCTION

Total Structure Weight: 27058.12

Macromolecule Entities
Molecule Chains Length Organism Details
Hypothetical protein SpyM3_0169 A 243 Streptococcus pyogenes Mutation: M1M, M6M, M14M, M36M, M67M, M73M, M79M, M124M, M143M, M169M, M194M
Details: all methionines modified to SeMet
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.244
  • R-Value Work: 0.213
  • Space Group: H 3 2

Unit Cell:

Length (Å) Angle (°)
a = 71.54 α = 90.00
b = 71.54 β = 90.00
c = 216.93 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-05-27
  • Released Date: 2003-12-02
  • Deposition author(s): Kuzin, A., Lee, I., Edstrom, W., Xiao, R., Acton, T., Rost, B., Montelione, G., Hunt, J., Tong, L., Northeast Structural Genomics Consortium (NESG)

Revision History

  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values
  • 2011-07-13
    Type: Source and taxonomy | Details: Removed strain from scientific name
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4