1PFV

METHIONYL-TRNA SYNTHETASE FROM ESCHERICHIA COLI COMPLEXED WITH DIFLUOROMETHIONINE

Structural Biology Knowledgebase: 1PFV SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.203
  • R-Value Work: 0.186

Literature

Macromolecules
Sequence Display for 1PFV

Classification: LIGASE

Total Structure Weight: 63209.32

Macromolecule Entities
Molecule Chains Length Organism Details
Methionyl-tRNA synthetase A 551 Escherichia coli EC#: 6.1.1.10 IUBMB
Fragment: RESIDUES 1-551
Gene Name(s): metG b2114 JW2101
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
2FM
Query on 2FM

A S-(DIFLUOROMETHYL)HOMOCYSTEINE
DIFLUOROMETHIONINE (Synonym)
C5 H9 F2 N O2 S
YHBNXKYHZMAFED-VKHMYHEASA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.203
  • R-Value Work: 0.186
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 78.57 α = 90.00
b = 45.22 β = 107.37
c = 86.07 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-05-27
  • Released Date: 2004-02-17
  • Deposition author(s): Crepin, T., Schmitt, E., Mechulam, Y., Sampson, P.B., Vaughan, M.D., Honek, J.F., Blanquet, S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4