1PF9

GroEL-GroES-ADP

Structural Biology Knowledgebase: 1PF9 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.99 Å
  • R-Value Free: 0.287
  • R-Value Work: 0.269

Literature

Macromolecules
Sequence Display for 1PF9

Classification: CHAPERONE

Total Structure Weight: 849056.88

Macromolecule Entities
Molecule Chains Length Organism Details
groEL protein A, B, C..., D, E, F, G, H, I, J, K, L, M, NA, B, C, D, E, F, G, H, I, J, K, L, M, N 524 Escherichia coli Gene Name(s): groL groEL mopA b4143 JW4103
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
groES protein O, P, Q..., R, S, T, UO, P, Q, R, S, T, U 97 Escherichia coli Gene Name(s): groS groES mopB b4142 JW4102
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ADP
Query on ADP

A, B, C, D, E, F, G ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B, C, D, E, F, G MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.99 Å
  • R-Value Free: 0.287
  • R-Value Work: 0.269
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 255.26 α = 90.00
b = 265.25 β = 90.00
c = 184.40 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-05-24
  • Released Date: 2003-11-04
  • Deposition author(s): Chaudhry, C., Farr, G.W., Todd, M.J., Rye, H.S., Brunger, A.T., Adams, P.D., Horwich, A.L., Sigler, P.B.

Revision History

  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor
  • 2011-07-13
    Type: Refinement description | Details: Fixed TLS group
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4