1PA9

Yersinia Protein-Tyrosine Phosphatase complexed with pNCS (Yop51,Pasteurella X,Ptpase,Yop51delta162) (Catalytic Domain, Residues 163-468) Mutant With Cys 235 Replaced By Arg (C235r)

Structural Biology Knowledgebase: 1PA9 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.243
  • R-Value Work: 0.226

Literature

Macromolecules
Sequence Display for 1PA9

Classification: HYDROLASE

Total Structure Weight: 31487.74

Macromolecule Entities
Molecule Chains Length Organism Details
Protein-tyrosine phosphatase yopH A 284 Yersinia enterocolitica EC#: 3.1.3.48 IUBMB
Fragment: Catalytic domain
Mutation: C73R
Gene Name(s): yopH yop51
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CSN
Query on CSN

A N,4-DIHYDROXY-N-OXO-3-(SULFOOXY)BENZENAMINIUM
C6 H5 N O7 S
XMCCOOONGGUOLA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
CSN N/A in BindingDB
Ki: 25000 nM  BindingMOAD
Ki: 25000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.243
  • R-Value Work: 0.226
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 49.36 α = 90.00
b = 55.90 β = 90.00
c = 97.84 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-05-13
  • Released Date: 2003-11-04
  • Deposition author(s): Sun, J.P., Wu, L., Fedorov, A.A., ALmo, S.C., Zhang, Z.Y.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4