1P9E

Crystal Structure Analysis of Methyl Parathion Hydrolase from Pseudomonas sp WBC-3


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.259
  • R-Value Work: 0.218

Literature

Macromolecules
Sequence Display for 1P9E

Classification: HYDROLASE

Total Structure Weight: 70443.69

Macromolecule Entities
Molecule Chains Length Organism Details
Methyl Parathion Hydrolase A, B 331 Pseudomonas sp. wbc-3 EC#: 3.1.8.1 IUBMB
Gene Name(s): mpd
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CD
Query on CD

B CADMIUM ION
Cd
WLZRMCYVCSSEQC-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
K
Query on K

A, B POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A, B SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.259
  • R-Value Work: 0.218
  • Space Group: P 43 21 2

Unit Cell:

Length (Å) Angle (°)
a = 85.02 α = 90.00
b = 85.02 β = 90.00
c = 199.77 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-05-11
  • Released Date: 2004-05-25
  • Deposition author(s): Dong, Y., Sun, L., Bartlam, M., Rao, Z., Zhang, X.

Revision History

  • Version 1_0: 2004-05-25

    Type: Initial release

  • Version 1_1: 2008-04-29

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Source and taxonomy, Version format compliance