1P8L

New Crystal Structure of Chlorella Virus DNA Ligase-Adenylate

Structural Biology Knowledgebase: 1P8L SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.95 Å
  • R-Value Free: 0.304
  • R-Value Work: 0.263

Literature

Macromolecules
Sequence Display for 1P8L

Classification: LIGASE

Total Structure Weight: 35475.78

Macromolecule Entities
Molecule Chains Length Organism Details
PBCV-1 DNA ligase A 304 Paramecium bursaria chlorella virus 1 Gene Name(s): A544R
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AMP
Query on AMP

A ADENOSINE MONOPHOSPHATE
C10 H14 N5 O7 P
UDMBCSSLTHHNCD-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.95 Å
  • R-Value Free: 0.304
  • R-Value Work: 0.263
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 91.06 α = 90.00
b = 60.57 β = 90.00
c = 70.27 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-05-07
  • Released Date: 2003-08-26
  • Deposition author(s): Odell, M., Malinina, L., Teplova, M., Shuman, S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor