1P72

Crystal structure of EHV4-TK complexed with Thy and ADP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.184

Literature

Macromolecules
Sequence Display for 1P72

Classification: TRANSFERASE

Total Structure Weight: 76230.03

Macromolecule Entities
Molecule Chains Length Organism Details
Thymidine kinase A, B 334 Equid alphaherpesvirus 4 EC#: 2.7.1.21 IUBMB
Gene Name(s): TK
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ADP
Query on ADP

A, B ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
THM
Query on THM

A, B THYMIDINE
DEOXYTHYMIDINE; 2'-DEOXYTHYMIDINE (Synonym)
C10 H14 N2 O5
IQFYYKKMVGJFEH-XLPZGREQSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.184
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 112.30 α = 90.00
b = 121.01 β = 90.00
c = 118.81 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-04-30
  • Released Date: 2003-11-04
  • Deposition author(s): Gardberg, A., Shuvalova, L., Monnerjahn, C., Konrad, M., Lavie, A.

Revision History

  • Version 1_0: 2003-11-04

    Type: Initial release

  • Version 1_1: 2008-04-29

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance