1P5J

Crystal Structure Analysis of Human Serine Dehydratase

Structural Biology Knowledgebase: 1P5J SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.247
  • R-Value Work: 0.189

Literature

Macromolecules
Sequence Display for 1P5J

Classification: LYASE

Total Structure Weight: 39806.14

Macromolecule Entities
Molecule Chains Length Organism Details
L-serine dehydratase A 372 Homo sapiens EC#: 4.3.1.17 IUBMB
Mutation: W270C
Gene Name(s): SDS Gene View SDH
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PLP
Query on PLP

A PYRIDOXAL-5'-PHOSPHATE
VITAMIN B6 Phosphate (Synonym)
C8 H10 N O6 P
NGVDGCNFYWLIFO-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.247
  • R-Value Work: 0.189
  • Space Group: I 4 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 157.44 α = 90.00
b = 157.44 β = 90.00
c = 59.19 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-04-27
  • Released Date: 2004-06-01
  • Deposition author(s): Sun, L., Liu, Y., Rao, Z.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update