1P5B

High Resolution Structure of Reduced Active Mutant of (S)-Mandelate Dehydrogenase


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.35 Å
  • R-Value Free: 0.201
  • R-Value Work: 0.187

Literature

Macromolecules
Sequence Display for 1P5B

Classification: OXIDOREDUCTASE

Total Structure Weight: 42879.92

Macromolecule Entities
Molecule Chains Length Organism Details
L(+)-Mandelate Dehydrogenase A 380 Pseudomonas putida Spinacia oleracea EC#: 1.1.3.15 IUBMB 1.1.99.31 IUBMB
Mutation: R15A
Details: 20 RESIDUE SUBSTITUTION FROM GLYCOLATE OXIDASE AT RESIDUE 177
Gene Name(s): mdlB
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FMN
Query on FMN

A FLAVIN MONONUCLEOTIDE
RIBOFLAVIN MONOPHOSPHATE (Synonym)
C17 H21 N4 O9 P
FVTCRASFADXXNN-SCRDCRAPSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MES
Query on MES

A 2-(N-MORPHOLINO)-ETHANESULFONIC ACID
C6 H13 N O4 S
SXGZJKUKBWWHRA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.35 Å
  • R-Value Free: 0.201
  • R-Value Work: 0.187
  • Space Group: I 4

Unit Cell:

Length (Å) Angle (°)
a = 98.80 α = 90.00
b = 98.80 β = 90.00
c = 87.30 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-04-25
  • Released Date: 2003-10-28
  • Deposition author(s): Sukumar, N., Mitra, B., Mathews, F.S.

Revision History

  • 2008-04-29
    Type: Version format compliance
  • 2011-07-13
    Type: Derived calculations, Version format compliance
  • 2017-08-23
    Type: Advisory, Source and taxonomy