1P4V

CRYSTAL STRUCTURE OF THE GLYCOSYLASPARAGINASE PRECURSOR D151N MUTANT WITH GLYCINE

Structural Biology Knowledgebase: 1P4V SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.225
  • R-Value Work: 0.193

Literature

Macromolecules
Sequence Display for 1P4V

Classification: HYDROLASE

Total Structure Weight: 64507.91

Macromolecule Entities
Molecule Chains Length Organism Details
N(4)-(Beta-N-acetylglucosaminyl)-L-asparaginase precursor A, C 295 Elizabethkingia meningoseptica EC#: 3.5.1.26 IUBMB
Fragment: Glycosylasparaginase, alpha and beta chains
Mutation: D151N
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GLY
Query on GLY

A, C GLYCINE
C2 H5 N O2
DHMQDGOQFOQNFH-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.225
  • R-Value Work: 0.193
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 45.88 α = 80.92
b = 52.37 β = 90.41
c = 61.74 γ = 105.10

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-04-24
  • Released Date: 2003-05-06
  • Deposition author(s): Qian, X., Guan, C., Guo, H.C.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4